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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3jb9X_

Fold library idPDB HeaderMoleculeTitle
c3jb9X_PDB header: rna binding protein/rnaChain: X: PDB Molecule: pre-mrna-splicing factor cwf11;PDBTitle: cryo-em structure of the yeast spliceosome at 3.6 angstrom resolution


Added to library: Sat Sep 26 08:57:03 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KKKQIINYANSNWGEGVEFQETMLQCILEAVIVSAKQVLSLLHELKLFENFLWQRVNTEMSLNHINLTCM
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T

TTS
TTTTT

GGG

TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence LLLYKSKYEYITWDLINRFQLFFEKVIEVSLSLNLSEVVYMIQFITLCFQFSNIEKLRKLVYQLTNISIL
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Known secondary structure (DSSP) TT


TTT


SSSTTTTTSSSGGGG
 .........150.........160.........170.........180.........190.........200.........210
Sequence NSLLDKVKYLLHDSSSLTKAFDSYKEKRPVEKFPLHNLLSRWIHSLLIKSISYAQKQEAKVTPLLAIINM
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Known secondary structure (DSSP) GG


TTTTT



TTS



SGGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence SLVLLSAFPTRRFAHPVIEDSCFYTALRMSLYYDSNELFKKMTDDLNYVLKFPFDNTRGNEYEKEQKIRN
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Known secondary structure (DSSP) TSSTTSSSSTTS
B
SSS

B

 .........290.........300.........310.........320.........330.........340.........350
Sequence DELVYYHLQLTLFSDFQLQQRQKLEEITSFLSFNSLKSLCSKCYLRTSFPEKYAIKVDFEFLKNVFINTY
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Known secondary structure (DSSP) T




GGG

TS
S


SSS




T
 .........360.........370.........380.........390.........400.........410.........420
Sequence DRRLVNDYDEIINFTLKDVLGERSVMDQENSLTNTAIQYLSISFFMRQQSKAYKKLLLRSLYAELLNFSE
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Known secondary structure (DSSP)


SS
SS

GGGGGGGTTT

TTS




S

SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence QYRRLSIKNATKNLNFFSLNNFKVTSVAPLPQFVKCQMGLSRPSALRDLKNSSPFLCLIYISKDMEYKLL
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Known secondary structure (DSSP)


SSS















S








T











S
TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence HGNALDPLEVTDFTIATICNDDVGMFMQSDSDNKSINVYLSPFYYHSLAGLGEYRPKQLKFNFALVLSNK
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Known secondary structure (DSSP)


TTS







TT







SS



GGGGGGGTT




SS






 .........570.........580.........590.........600.........610.........620.........630
Sequence YWLDLNILVSLLNRAKEFPKWFEDLFLGFGTPDICAFPNANSIYARNLFNTVEQLQSVLPNCHVPSNLST
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Known secondary structure (DSSP)
GGGTT


TT
S
GGGG
TTT

B


BTT

SSSSS



S


 .........640.........650.........660.........670.........680.........690.........700
Sequence ESLLIKFYTNQNKSADVTASDRHFSNRLYTYNDKQLESILRGSQPGLTMVNGPTRCGKHVLVCKLLEVLQ
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Known secondary structure (DSSP) GGG

S


TTS









SSSSB

SSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence DTSPNDRTVVLSDSNFSMNTLFTLLEKARCFHHLLYLSDEGTLERYGTLSSWISKLPGLLREIGRLAASI
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Known secondary structure (DSSP)
SS

SSTTTT





B






ST
 .........780.........790.........800.........810.........820.........830.........840
Sequence QAPGSHDASPDTALYFRDAYIKRLWEKYLNTVDKDSVDAYNRFPFHSYFGDKSKRPIETYNKDNFFDYAT
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Known secondary structure (DSSP) T
TT




TTT


SSS
SSTTSSSSS
S




 .........850.........860.........870.........880.........890.........900.........910
Sequence KLYGELEYMFQQLEEIRPFGLLRYYEDQELYALCQQSRIIGCTWTSLSTRLGTLKEKGFCFNNLIVMNSQ
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Known secondary structure (DSSP)
SSTTT
STTT


S
TTGG
 .........920.........930.........940.........950.........960.........970.........980
Sequence NISESSITSILLSNCEPTGFDRLVLLGNQYNGSLFKRLRYLKSRIIDLNTQYNVRESISSLCSSIYPLDI
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Known secondary structure (DSSP) GS



SS











S


B



SS

TTTTTTTT


 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence KTVDSSPNKRLDYGNSGFAHEVQFINVGAFKGSQETEPVSGYKQNLGEAEYAVALFQYMRMLGYPTNEIV
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Known secondary structure (DSSP)

GGGTTS


TTSSSS




TT
SS

SSTT



TT

GGG

 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence ICTLYESQVSLLNEIISVRCSHNSFFGQPAFVGTVEKLPKRVNFVIFTTVESKEASDHWNPKTFYKAFSA
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Known secondary structure (DSSP)

BS
TTTTT
TT



S

SBSTT




S





SS

GGGG
TTTTS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence CSYGLYVLCNRDLFRSTRGLEKLWNEIEKTPDKLLLTTGEIYPSSHSSVETFEIENLLHLSNYVVEMTKK
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Known secondary structure (DSSP)

S


TTTGGGSTTTS

S

B
TTS
TTT



S

B


S
 .....
Sequence RLNTN
Predicted secondary structure


SS confidence




Known secondary structure (DSSP) T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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