PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3jb9A_

Fold library id	PDB Header	Molecule	Title
c3jb9A_	PDB header: rna binding protein/rna	Chain: A: PDB Molecule: pre-mrna-splicing factor spp42;	PDBTitle: cryo-em structure of the yeast spliceosome at 3.6 angstrom resolution

Links to external resources
Added to library: Sat Sep 26 11:12:15 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L E K Q L N E R A R K W R A S Q K S K F G V K R K Q G Y V Q T E K A D L P P E H L R K I M K D R G D M S S R K F R A D K R S Y L G A L K Y L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T
S S S S
T T T
S G G G T T T T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P H A V L K L L E N M P M P W E E Y R E V K V L Y H V T G A I T F V N E S P R V I E P H F I A Q W G T M W M M M R R E K R D R K N F K R L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
S
B
T T T
B
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence F P P F D D E E P P F S I D Q L L D L E P L E A I R M D L D E E D D A P V M D W F Y E N K A L E D T P H V N G P T Y R R W K L N L P Q M A N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S
S S S
T T T S T T T T T T T T
S S T T T T S S S B
S T T
B

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence L H R L G Y Q L L S D L R D D N Y F Y L F N D N S F F T A K A L N V A I P G G P K F E P L Y E F N D I Y K L I I R H P I K T E Y R I A F P Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
S S G G G T T
S
S S S
S
T T T S
S
T T S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence L Y N S R A R S V A L S E Y H Q P S N V F V P P E D P D L P A F F W D P I I N P I T S R Q L T L H E L D T S P E D S A I E E D P N F E I P F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
S
S S T T S
S S
T T S
S
S S
T
S S
S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence D P F F H S E D I E F E H T A S A L I L L W A P H P F N K R S G A T K R A Q D V P L I K H W Y L E H C P P N Q P V K V R V S Y Q K L L K S H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S
S
S S T S
S S
B
G G G
S S T T
S S

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence V M N K L H M A H P K S H T N R S L L R Q L K N T K F F Q S T S I D W V E A G L Q V C R Q G Y N M L Q L L I H R K G L T Y L H L D Y N C N L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T G G G S T T
B T T
T T
T T S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence K P T K T L T T K E R K K S R F G N A F H L M R E I L R L T K L I V D S H V Q Y R L G N I D A Y Q L A D G L H Y I F N H V G Q L T G M Y R Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
G G G T S S S
T S
G G G

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence K Y R L M R Q I R A C K D F K H L I Y Y R F N T G P V G K G P G C G F W A P S W R V W L F F L R G I V P L L E R W L G N L L A R Q F E G R H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G G T
T T T
S S S
T T

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence S T G V A K Q I T K Q R V D S H Q D L E L R A A V M N D I L D M I P E G I R Q G K S K T I L Q H L S E A W R C W K A N I P W K V P G L P A P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
S T T S T T T S
S S S
S T T T
S S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence I E N M I L R Y V K S K A D W W T S V A H F N R E R I R R G A T V D K T V A K K N L G R L T R L W L K A E Q E R Q H N Y L K D G P Y V T A D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T S S S
S T T
S S

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence E A V A I Y T T F V H W L E S R R F Q P I P F P P L S Y K H D T K L L V L A L E R L K E A Y S V K G R L N Q S Q R E E L A L V E Q A Y D N P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
B
S S
T T
S S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence H E M L S Q I K R R L L T M R T F K E V G I E F M D M Y S H L I P V Y S V D P M E K I C D A Y L D Q Y L W F E A D R R H L F P S W V K P S D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T
S
S S B
S
S

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence S E P P P L L V Y K W C Q G I N N L T D V W E T S N G E C N V L M E T R L S K V F E K V D L T L L N R L M S L L M D T N L A S Y A S A K N N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S T T
S
S S S
S S
S B
T T

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence V V L S Y K D M S H T N S Y G L V R G L Q F S S F I W Q F Y G L V L D L L I L G L Q R A T E I A G P A D A P N D F L H F K D Q A T E T S H P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S S
S
S T T T T T S
S S S
T T
S
S S S

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . . . . . . 1080 . . . . . . . . . 1090 . . . . . . . . . 1100 . . . . . . . . . 1110 . . . . . . . . . 1120

Sequence I R L Y T R Y I D K V Y I M F R F T D E E S R D L I Q R F L N E N P D P T N S N V V N Y S K G K K N C W P R D A R M R L M K H D V N L G R A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S S
T T T T S
S
S T T S
T T T S

. . . . . . . . . 1130 . . . . . . . . . 1140 . . . . . . . . . 1150 . . . . . . . . . 1160 . . . . . . . . . 1170 . . . . . . . . . 1180 . . . . . . . . . 1190

Sequence V F W E I R N R L P R S L T T L E W E D T F P S V Y S K D N P N L L F S M T G F E V R I L P K I R Q N E E F S L K D G V W N L T D N R T K Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T
S T T
S S S
B
S S
B
S
S S
T T T
S

. . . . . . . . . 1200 . . . . . . . . . 1210 . . . . . . . . . 1220 . . . . . . . . . 1230 . . . . . . . . . 1240 . . . . . . . . . 1250 . . . . . . . . . 1260

Sequence R T A Q A F I R V T E D G I N Q F G N R I R Q I L M S S G S T T F T K I A N K W N T A L I A L M T Y Y R E A A I S T P E L L D L L V K C E S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T S
T T G G G T

. . . . . . . . . 1270 . . . . . . . . . 1280 . . . . . . . . . 1290 . . . . . . . . . 1300 . . . . . . . . . 1310 . . . . . . . . . 1320 . . . . . . . . . 1330

Sequence K I Q T R V K I S L N S K M P S R F P P A V F Y S P K E L G G L G M L S M G H V L I P Q S D L R W S K Q T D T G I T H F R S G M T T N G E H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
S S
G G G T
S S
B
G G G S
T T
T T T S S
S

. . . . . . . . . 1340 . . . . . . . . . 1350 . . . . . . . . . 1360 . . . . . . . . . 1370 . . . . . . . . . 1380 . . . . . . . . . 1390 . . . . . . . . . 1400

Sequence L I P N L Y R Y I Q P W E S E F I D S Q R V W A E Y A M K R Q E A L Q Q N R R L T L E D L E D S W D R G I P R I N T L F Q K D R H T L A Y D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
S G G G S
T
T T S S S
T T T T G G G G S
T T T T

. . . . . . . . . 1410 . . . . . . . . . 1420 . . . . . . . . . 1430 . . . . . . . . . 1440 . . . . . . . . . 1450 . . . . . . . . . 1460 . . . . . . . . . 1470

Sequence K G W R V R T E F K Q Y Q L L K N N P F W W T S Q R H D G K L W Q L N N Y R V D V I Q A L G G V E G I L E H T M F K A T G F P S W E G L F W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S G G G T S S
S
S
T T T S
T T T T T T T
S
S T T B

. . . . . . . . . 1480 . . . . . . . . . 1490 . . . . . . . . . 1500 . . . . . . . . . 1510 . . . . . . . . . 1520 . . . . . . . . . 1530 . . . . . . . . . 1540

Sequence E K A S G F K K L T N A Q R S G L N Q I P N R R F T L W W S P T I N R A N V Y V G F Q V Q L D L T G I M M H G K I P T L K I S L I Q I F R S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S T S S T T T
T T S S
S S
T T S
S

. . . . . . . . . 1550 . . . . . . . . . 1560 . . . . . . . . . 1570 . . . . . . . . . 1580 . . . . . . . . . 1590 . . . . . . . . . 1600 . . . . . . . . . 1610

Sequence H L W Q K I H E S V V W D L C Q V L D Q E L E S L Q I E T V Q K E T I H P R K S Y K M N S S C A D I L L L A A Y K W N V S R P S L L N D N R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T S T
S
T T S T T
S S
S
S S
B
S
S S S S

. . . . . . . . . 1620 . . . . . . . . . 1630 . . . . . . . . . 1640 . . . . . . . . . 1650 . . . . . . . . . 1660 . . . . . . . . . 1670 . . . . . . . . . 1680

Sequence D V L D N T T T N K Y W I D V Q L R F G D Y D S H D I E R Y T R A K F L D Y S T D A Q S M Y P S P T G V L I G I D L C Y N M H S A Y G N W I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
B S
S S
S S S
S S S
T T T T
S

. . . . . . . . . 1690 . . . . . . . . . 1700 . . . . . . . . . 1710 . . . . . . . . . 1720 . . . . . . . . . 1730 . . . . . . . . . 1740 . . . . . . . . . 1750

Sequence P G M K P L I Q Q S M N K I M K A N P A L Y V L R E R I R K G L Q L Y A S E Q Y L S S S N Y A E L F S N Q I Q L F V D D T N V Y R V T I H K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T
B
S T S S S
T T S S

. . . . . . . . . 1760 . . . . . . . . . 1770 . . . . . . . . . 1780 . . . . . . . . . 1790 . . . . . . . . . 1800 . . . . . . . . . 1810 . . . . . . . . . 1820

Sequence T F E G N L T T K P I N G A I F I F N P R T G Q L F L K V I H T S V W A G Q K R L G Q L A K W K T A E E V A A L I R S L P V E E Q P R Q I I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
B
S S S
B
S S
S S S
T T T
S

. . . . . . . . . 1830 . . . . . . . . . 1840 . . . . . . . . . 1850 . . . . . . . . . 1860 . . . . . . . . . 1870 . . . . . . . . . 1880 . . . . . . . . . 1890

Sequence V T R K G M L D P L E V H L L D F P N I T I K G S E L Q L P F Q A I I K L D K I N D L I L R A T E P Q M V L F N L Y D D W L Q S V S S Y T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S G G G T T S S T T S
S S S T T S
S
S S T T G G G T S

. . . . . . . . . 1900 . . . . . . . . . 1910 . . . . . . . . . 1920 . . . . . . . . . 1930 . . . . . . . . . 1940 . . . . . . . . . 1950 . . . . . . . . . 1960

Sequence F S R L I L I L R A L N V N T E K T K L I L R P D K S I I T K E N H V W P N L D D Q Q W L D V E P K L R D L I L A D Y A K K N N I N V A S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S S T T S S S S
S S
T T S S S
S S
S S

. . . .

Sequence T N S E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	E	K	Q	L	N	E	R	A	R	K	W	R	A	S	Q	K	S	K	F	G	V	K	R	K	Q	G	Y	V	Q	T	E	K	A	D	L	P	P	E	H	L	R	K	I	M	K	D	R	G	D	M	S	S	R	K	F	R	A	D	K	R	S	Y	L	G	A	L	K	Y	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T		T	T		S	S	S	S																					T	T	T		S	G	G	G	T	T	T									T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	H	A	V	L	K	L	L	E	N	M	P	M	P	W	E	E	Y	R	E	V	K	V	L	Y	H	V	T	G	A	I	T	F	V	N	E	S	P	R	V	I	E	P	H	F	I	A	Q	W	G	T	M	W	M	M	M	R	R	E	K	R	D	R	K	N	F	K	R	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T				T	T		S			B							T	T	T											B																						T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	F	P	P	F	D	D	E	E	P	P	F	S	I	D	Q	L	L	D	L	E	P	L	E	A	I	R	M	D	L	D	E	E	D	D	A	P	V	M	D	W	F	Y	E	N	K	A	L	E	D	T	P	H	V	N	G	P	T	Y	R	R	W	K	L	N	L	P	Q	M	A	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S		S		S	S	S																							T	T	T	S	T	T	T	T	T	T	T	T		S	S	T	T	T	T	S	S	S	B		S	T	T				B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	L	H	R	L	G	Y	Q	L	L	S	D	L	R	D	D	N	Y	F	Y	L	F	N	D	N	S	F	F	T	A	K	A	L	N	V	A	I	P	G	G	P	K	F	E	P	L	Y	E	F	N	D	I	Y	K	L	I	I	R	H	P	I	K	T	E	Y	R	I	A	F	P	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	T	S					S	S	G	G	G	T	T		S															S	S	S										S		T	T	T	S				S								T	T	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	L	Y	N	S	R	A	R	S	V	A	L	S	E	Y	H	Q	P	S	N	V	F	V	P	P	E	D	P	D	L	P	A	F	F	W	D	P	I	I	N	P	I	T	S	R	Q	L	T	L	H	E	L	D	T	S	P	E	D	S	A	I	E	E	D	P	N	F	E	I	P	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	S			S																	S	S	T	T	S		S	S				T	T	S							S							S	S									T		S	S					S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	D	P	F	F	H	S	E	D	I	E	F	E	H	T	A	S	A	L	I	L	L	W	A	P	H	P	F	N	K	R	S	G	A	T	K	R	A	Q	D	V	P	L	I	K	H	W	Y	L	E	H	C	P	P	N	Q	P	V	K	V	R	V	S	Y	Q	K	L	L	K	S	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S		S	S	S		S			S	S									T	S							S	S				B		G	G	G			S	S	T	T								S	S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	V	M	N	K	L	H	M	A	H	P	K	S	H	T	N	R	S	L	L	R	Q	L	K	N	T	K	F	F	Q	S	T	S	I	D	W	V	E	A	G	L	Q	V	C	R	Q	G	Y	N	M	L	Q	L	L	I	H	R	K	G	L	T	Y	L	H	L	D	Y	N	C	N	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		G	G	G	T	G	G	G	S	T	T							B																							T	T		T	T					T	T	S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	K	P	T	K	T	L	T	T	K	E	R	K	K	S	R	F	G	N	A	F	H	L	M	R	E	I	L	R	L	T	K	L	I	V	D	S	H	V	Q	Y	R	L	G	N	I	D	A	Y	Q	L	A	D	G	L	H	Y	I	F	N	H	V	G	Q	L	T	G	M	Y	R	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S																																			G	G	G	T	S	S	S															T					S			G	G	G
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	K	Y	R	L	M	R	Q	I	R	A	C	K	D	F	K	H	L	I	Y	Y	R	F	N	T	G	P	V	G	K	G	P	G	C	G	F	W	A	P	S	W	R	V	W	L	F	F	L	R	G	I	V	P	L	L	E	R	W	L	G	N	L	L	A	R	Q	F	E	G	R	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G	G	G																	T		T	T	T		S	S	S																																			T	T
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	S	T	G	V	A	K	Q	I	T	K	Q	R	V	D	S	H	Q	D	L	E	L	R	A	A	V	M	N	D	I	L	D	M	I	P	E	G	I	R	Q	G	K	S	K	T	I	L	Q	H	L	S	E	A	W	R	C	W	K	A	N	I	P	W	K	V	P	G	L	P	A	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S		S						S	T	T	S									T	T	T									S		S	S	S		S	T	T																		T						S	S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	I	E	N	M	I	L	R	Y	V	K	S	K	A	D	W	W	T	S	V	A	H	F	N	R	E	R	I	R	R	G	A	T	V	D	K	T	V	A	K	K	N	L	G	R	L	T	R	L	W	L	K	A	E	Q	E	R	Q	H	N	Y	L	K	D	G	P	Y	V	T	A	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T							T	T	T	T	T	S	S	S				S																												T	T			S	S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	E	A	V	A	I	Y	T	T	F	V	H	W	L	E	S	R	R	F	Q	P	I	P	F	P	P	L	S	Y	K	H	D	T	K	L	L	V	L	A	L	E	R	L	K	E	A	Y	S	V	K	G	R	L	N	Q	S	Q	R	E	E	L	A	L	V	E	Q	A	Y	D	N	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T				B					S	S		T	T																				S	S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	H	E	M	L	S	Q	I	K	R	R	L	L	T	M	R	T	F	K	E	V	G	I	E	F	M	D	M	Y	S	H	L	I	P	V	Y	S	V	D	P	M	E	K	I	C	D	A	Y	L	D	Q	Y	L	W	F	E	A	D	R	R	H	L	F	P	S	W	V	K	P	S	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																												S	S	S																													T	T		S		S	S	B		S		S
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	S	E	P	P	P	L	L	V	Y	K	W	C	Q	G	I	N	N	L	T	D	V	W	E	T	S	N	G	E	C	N	V	L	M	E	T	R	L	S	K	V	F	E	K	V	D	L	T	L	L	N	R	L	M	S	L	L	M	D	T	N	L	A	S	Y	A	S	A	K	N	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S																S	S	T	T		S			S	S	S											S	S							S											B												T	T
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	V	V	L	S	Y	K	D	M	S	H	T	N	S	Y	G	L	V	R	G	L	Q	F	S	S	F	I	W	Q	F	Y	G	L	V	L	D	L	L	I	L	G	L	Q	R	A	T	E	I	A	G	P	A	D	A	P	N	D	F	L	H	F	K	D	Q	A	T	E	T	S	H	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T						S	S	S			S		S	T	T														T	T	T	S												S	S	S				T	T			S							S	S	S
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120
Sequence	I	R	L	Y	T	R	Y	I	D	K	V	Y	I	M	F	R	F	T	D	E	E	S	R	D	L	I	Q	R	F	L	N	E	N	P	D	P	T	N	S	N	V	V	N	Y	S	K	G	K	K	N	C	W	P	R	D	A	R	M	R	L	M	K	H	D	V	N	L	G	R	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T																								S			S	S			T	T	T	T	S			S		S	T	T	S		T	T	T	S
	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190
Sequence	V	F	W	E	I	R	N	R	L	P	R	S	L	T	T	L	E	W	E	D	T	F	P	S	V	Y	S	K	D	N	P	N	L	L	F	S	M	T	G	F	E	V	R	I	L	P	K	I	R	Q	N	E	E	F	S	L	K	D	G	V	W	N	L	T	D	N	R	T	K	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S		T	T	T					S	T	T							S	S	S						B			S	S			B										S						S	S							T	T	T		S
	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260
Sequence	R	T	A	Q	A	F	I	R	V	T	E	D	G	I	N	Q	F	G	N	R	I	R	Q	I	L	M	S	S	G	S	T	T	F	T	K	I	A	N	K	W	N	T	A	L	I	A	L	M	T	Y	Y	R	E	A	A	I	S	T	P	E	L	L	D	L	L	V	K	C	E	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																													S	S																			T	T	S								T	T	G	G	G	T
	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330
Sequence	K	I	Q	T	R	V	K	I	S	L	N	S	K	M	P	S	R	F	P	P	A	V	F	Y	S	P	K	E	L	G	G	L	G	M	L	S	M	G	H	V	L	I	P	Q	S	D	L	R	W	S	K	Q	T	D	T	G	I	T	H	F	R	S	G	M	T	T	N	G	E	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S			S	S			S					S		G	G	G	T							S	S			B			G	G	G	S							T	T							T	T	T	S	S		S
	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400
Sequence	L	I	P	N	L	Y	R	Y	I	Q	P	W	E	S	E	F	I	D	S	Q	R	V	W	A	E	Y	A	M	K	R	Q	E	A	L	Q	Q	N	R	R	L	T	L	E	D	L	E	D	S	W	D	R	G	I	P	R	I	N	T	L	F	Q	K	D	R	H	T	L	A	Y	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B				S	G	G	G	S																												T									T	T	S	S	S		T	T	T	T	G	G	G	G	S		T	T					T	T
	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470
Sequence	K	G	W	R	V	R	T	E	F	K	Q	Y	Q	L	L	K	N	N	P	F	W	W	T	S	Q	R	H	D	G	K	L	W	Q	L	N	N	Y	R	V	D	V	I	Q	A	L	G	G	V	E	G	I	L	E	H	T	M	F	K	A	T	G	F	P	S	W	E	G	L	F	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S								G	G	G	T	S	S				S			S			T	T	T	S															T	T	T	T									T	T					T		S		S	T	T	B
	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.	.	.	.	.	.	1540
Sequence	E	K	A	S	G	F	K	K	L	T	N	A	Q	R	S	G	L	N	Q	I	P	N	R	R	F	T	L	W	W	S	P	T	I	N	R	A	N	V	Y	V	G	F	Q	V	Q	L	D	L	T	G	I	M	M	H	G	K	I	P	T	L	K	I	S	L	I	Q	I	F	R	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T	S									T					S	S	T	T	T									T	T	S	S				S	S											T	T	S		S
	.	.	.	.	.	.	.	.	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610
Sequence	H	L	W	Q	K	I	H	E	S	V	V	W	D	L	C	Q	V	L	D	Q	E	L	E	S	L	Q	I	E	T	V	Q	K	E	T	I	H	P	R	K	S	Y	K	M	N	S	S	C	A	D	I	L	L	L	A	A	Y	K	W	N	V	S	R	P	S	L	L	N	D	N	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S																		T	T	S					T		S									T	T	S	T	T		S	S					S						S	S		B				S				S	S	S	S
	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.	.	.	.	.	.	.	.	1640	.	.	.	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.	.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680
Sequence	D	V	L	D	N	T	T	T	N	K	Y	W	I	D	V	Q	L	R	F	G	D	Y	D	S	H	D	I	E	R	Y	T	R	A	K	F	L	D	Y	S	T	D	A	Q	S	M	Y	P	S	P	T	G	V	L	I	G	I	D	L	C	Y	N	M	H	S	A	Y	G	N	W	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S		S			B	S													S	S																			S	S	S			S	S	S									T	T	T	T						S
	.	.	.	.	.	.	.	.	.	1690	.	.	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.	.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.	1740	.	.	.	.	.	.	.	.	.	1750
Sequence	P	G	M	K	P	L	I	Q	Q	S	M	N	K	I	M	K	A	N	P	A	L	Y	V	L	R	E	R	I	R	K	G	L	Q	L	Y	A	S	E	Q	Y	L	S	S	S	N	Y	A	E	L	F	S	N	Q	I	Q	L	F	V	D	D	T	N	V	Y	R	V	T	I	H	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T																															T			B							S							T	S	S	S							T	T	S	S
	.	.	.	.	.	.	.	.	.	1760	.	.	.	.	.	.	.	.	.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.	.	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.	.	.	.	.	1820
Sequence	T	F	E	G	N	L	T	T	K	P	I	N	G	A	I	F	I	F	N	P	R	T	G	Q	L	F	L	K	V	I	H	T	S	V	W	A	G	Q	K	R	L	G	Q	L	A	K	W	K	T	A	E	E	V	A	A	L	I	R	S	L	P	V	E	E	Q	P	R	Q	I	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S											B						S	S	S							B							S	S		S	S																				S		T	T	T			S
	.	.	.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.	.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.	.	.	1890
Sequence	V	T	R	K	G	M	L	D	P	L	E	V	H	L	L	D	F	P	N	I	T	I	K	G	S	E	L	Q	L	P	F	Q	A	I	I	K	L	D	K	I	N	D	L	I	L	R	A	T	E	P	Q	M	V	L	F	N	L	Y	D	D	W	L	Q	S	V	S	S	Y	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	G	G	G								T	T	S	S	T	T	S												S	S	S	T	T	S												S								S	S	T	T	G	G	G	T	S
	.	.	.	.	.	.	.	.	.	1900	.	.	.	.	.	.	.	.	.	1910	.	.	.	.	.	.	.	.	.	1920	.	.	.	.	.	.	.	.	.	1930	.	.	.	.	.	.	.	.	.	1940	.	.	.	.	.	.	.	.	.	1950	.	.	.	.	.	.	.	.	.	1960
Sequence	F	S	R	L	I	L	I	L	R	A	L	N	V	N	T	E	K	T	K	L	I	L	R	P	D	K	S	I	I	T	K	E	N	H	V	W	P	N	L	D	D	Q	Q	W	L	D	V	E	P	K	L	R	D	L	I	L	A	D	Y	A	K	K	N	N	I	N	V	A	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	S	S	S	T	T	S	S					S	S			S	S				T	T	S	S	S																											S	S					S	S
	.	.	.	.
Sequence	T	N	S	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)