PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3jb4A_

Fold library id	PDB Header	Molecule	Title
c3jb4A_	PDB header: virus	Chain: A: PDB Molecule: vp1;	PDBTitle: structure of ljungan virus: insight into picornavirus packaging

Links to external resources
Added to library: Sat Oct 24 13:59:36 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N V E A A Q G E E L A T E V G L R A T E N D G S L S E Q L N M S Q P M F L N F K K H K V N I Y A A T H T K V D H I F G R A W A V G V F N T E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S G G G T T T
T T
S T T
S S
S S S S
S S S T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T A A I Q K F D L H F P T S T H G A L S R F F C H W T G E L N I H I L N V S T T N A F L K V A H T W F G T D S G I A R T A T L E S N G T M I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S G G G G G G G
S S
S S
S B S S S B
S
G G G T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I P P N E Q M T L C V P Y Y S E V P L R C V K G S D R N S A G L G S L F T Q A V G R T I S N R V Q I F V S F R C P N F F F P L P A P R E A T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S S S S S
T T T T S S S S
S
S S
S

. .

Sequence S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	V	E	A	A	Q	G	E	E	L	A	T	E	V	G	L	R	A	T	E	N	D	G	S	L	S	E	Q	L	N	M	S	Q	P	M	F	L	N	F	K	K	H	K	V	N	I	Y	A	A	T	H	T	K	V	D	H	I	F	G	R	A	W	A	V	G	V	F	N	T	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S					S	S	G	G	G	T	T	T				T	T				S	T	T											S	S								S	S	S	S		S	S	S					T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	A	A	I	Q	K	F	D	L	H	F	P	T	S	T	H	G	A	L	S	R	F	F	C	H	W	T	G	E	L	N	I	H	I	L	N	V	S	T	T	N	A	F	L	K	V	A	H	T	W	F	G	T	D	S	G	I	A	R	T	A	T	L	E	S	N	G	T	M	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S											S	S	G	G	G	G	G	G	G																	S	S										S	S		S	B	S	S	S	B			S			G	G	G	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	P	P	N	E	Q	M	T	L	C	V	P	Y	Y	S	E	V	P	L	R	C	V	K	G	S	D	R	N	S	A	G	L	G	S	L	F	T	Q	A	V	G	R	T	I	S	N	R	V	Q	I	F	V	S	F	R	C	P	N	F	F	F	P	L	P	A	P	R	E	A	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T												S	S	S	S			S	S				T	T	T	T	S	S									S	S		S											S	S														S
	.	.
Sequence	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)