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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3javD_

Fold library idPDB HeaderMoleculeTitle
c3javD_PDB header: transport proteinChain: D: PDB Molecule: inositol 1,4,5-trisphosphate receptor type 1;PDBTitle: structure of full-length ip3r1 channel in the apo-state determined by2 single particle cryo-em


Added to library: Sat Oct 10 10:50:03 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MSSFLHIGDICSLYAEGSTNGFISTLGLVDDRCVVQPEAGDLNNPPKKFRDCLFKLCPMNRYSAQKQFWK
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Known secondary structure (DSSP)





SSS



B

STT

B


SSSTT





SS


SSS

TT





S
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence AAKPGANSTTDAVLLNKLHHAADLEKKQNETENRKLLGTVIQYGNVIQLLHLKSNKYLTVNKRLPALLEK
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Known secondary structure (DSSP) TSS

SS



TTTT



BT



BTTTTBB



SSS


SST
 .........150.........160.........170.........180.........190.........200.........210
Sequence NAMRVTLDEAGNEGSWFYIQPFYKLRSIGDSVVIGDKVVLNPVNAGQPLHASSHQLVDNPGCNEVNSVNC
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Known secondary structure (DSSP) T





BS


TT
S





TTTS
SSB


SS






TTS










TTSSS




SSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence NTSWKIVLFMKWSDNKDDILKGGDVVRLFHAEQEKFLTCDEHRKKQHVFLRTTGRQSATSATSSKALWEV
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TTTTSSSTT
GGG

B




SS



SS


SGGGS
SSS






B

 .........290.........300.........310.........320.........330.........340.........350
Sequence EVVQHDPCRGGAGYWNSLFRFKHLATGHYLAAEVDQEKMVYSLVSVPEGNDISSIFELDPTTLRGGDSLV
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Known secondary structure (DSSP)


SSSS


STT
TT






TTTS




S






S
S

S



SSSS



SS
SS

S
 .........360.........370.........380.........390.........400.........410.........420
Sequence PRNSYVRLRHLCTNTWVHSTNIPIDKEEEKPVMLKIGTSPLKEDKEAFAIVPVSPAEVRDLDFANDASKV
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Known secondary structure (DSSP)

S



TTTT










SS

TT




S


SS

S








 .........430.........440.........450.........460.........470.........480.........490
Sequence LGSIAGKLEKGTITQNERRSVTKLLEDLVYFVTGGTNSGQDVLEVVFSKPNRERQKLMREQNILKQIFKL
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Known secondary structure (DSSP) TTT


SS


SS

STTS
TTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence LQAPFTDCGDGPMLRLEELGDQRHAPFRHICRLCYRVLRHSQQDYRKNQEYIAKQFGFMQKQIGYDVLAE
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Known secondary structure (DSSP) TTSTTTT

SS

SSSSSGGGTSTTTT
----------
 .........570.........580.........590.........600.........610.........620.........630
Sequence DTITALLHNNRKLLEKHITAAEIDTFVSLVRKNREPRFLDYLSDLCVSMNKSIPVTQELICKAVLNPTNA
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Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........640.........650.........660.........670.........680.........690.........700
Sequence DILIETKLVLSRFEFEGVSTGENALEAGEDEEEVWLFWRDSNKEIRSKSVRELAQDAKEGQKEDRDVLSY
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Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........710.........720.........730.........740.........750.........760.........770
Sequence YRYQLNLFARMCLDRQYLAINEISGQLDVDLILRCMSDENLPYDLRASFCRLMLHMHVDSKDEIKERFAQ
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Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........780.........790.........800.........810.........820.........830.........840
Sequence TMEFVEEYLRDVVCQRFPFSDKEKNKLTFEVVNLARNLIYFGFYNFSDLLRLTKILLAILDCVHVPEKED
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Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........850.........860.........870.........880.........890.........900.........910
Sequence IMVMDTKLKIIEILQFILNVRLDYRISCLLCIFKREFDESNSQSSETSSGNSSQEGPSNVPGALDFEHIE
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Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........920.........930.........940.........950.........960.........970.........980
Sequence EQAEGIFGGSEENTPLDLDDHGGRTFLRVLLHLTMHDYPPLVSGALQLLFRHFSQRQEVLQAFKQVQLLV
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Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence TSQDVDNYKQIKQDLDQLRSIVEKSELWVYVVKEILIRLSKLCVQESASVRKSRKQQQRLLRNMGAHAVV
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Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence LELLQIPYEKAEDTKMQEIMRLAHEFLQNFCAGNQQNQALLHKHINLFLNPGILEAVTMQHIFMNNFQLC
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Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence SEINERVVQHFVHCIETHGRNVQYIKFLQTIVKAEGKFIKKCQDMVMAELVNSGEDVLVFYNDRASFQTL
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Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence IQMMRSERDRMDENSPLFMYHIHLVELLAVCTEGKNVYTEIKCNSLLPLDDIVRVVTHEDCIPEVKIAYI
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Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence NFLNHCYVDTEVEMKEIYTSNHMWKLFENFLVDICRACNNTSDRKHADSVLEKYVTEIVMSIVTTFFSSP
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Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence SRDYRNIIERLQDIVSALEDRLRPLVQAELSVLVDVLHRPELLFPENTDARRKCESGGFICKLIKHTKQL
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Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence LEENEEKLCIKVLQTLREMMTKDRGGEMSLAEVQCHLDKEGASNLVIDLIMNASSDRVFHESILLAIALL
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Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence EGGNTTIQHSFFCRLTEDKKSEKFFKVFYDRMKVAQQEIKATVTVNTSDLGNKKKDDEKAKDDLEMSAVI
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Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence TIMQPILRFLQLLCENHNRDLQNFLRCQNNKTNYNLVCETLQFLDCICGSTTGGLGLLGLYINEKNVALI
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Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence NQTLESLTEYCQGPCHENQNCIATHESNGIDIITALILNDINPLGKKRMDLVLELKNNASKLLLAIMESR
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Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence HDSENAERILYNMRPKELVEVIKKAYMQGEVEFEDGENGEDGAASPRNVGHNIYILAHQLARHNKELQTM
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Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence LKPGGQVDGDEALEFYAKHTAQIEIVRLDRTMEQIVFPVPSICEFLTKESKLRIYYTTERDEQGSKINDF
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Known secondary structure (DSSP) ----------------------------------------------------------------------
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence FLRSEDLFNEMNWQKKLRAQPVLYWCARNMSFWSSISFNLAVLMNLLVAFFYPFKGVRGGTLEPHWSGLL
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Known secondary structure (DSSP) -----------------------------
TS
SS


S





SS
ST
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence WTAMLISLAIVIALPKPHGIRALIASTILRLIFSVGLQPTLFLLGAFNVCNKIIFLMSFVGNCGTFTRGY
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Known secondary structure (DSSP) SGGGGGTTTSSSSSSTT
TTTT
--
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence RAMVLDVEFLYHLLYLLICAMGLFVHEFFYSLLLFDLVYREETLLNVIKSVTRNGRPIILTAALALILVY
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Known secondary structure (DSSP) ------------------------



T
TTT
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence LFSIVGYLFFKDDFILEVDRLPNETAGPETGESLANDFLYSDVCRVETGENCTSPAPKEELLPVEETEQD
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Known secondary structure (DSSP) TSTT

SSS

-----------------------------------------
TTT

 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence KEHTCETLLMCIVTVLSHGLRSGGGVGDVLRKPSKEEPLFAARVIYDLLFFFMVIIIVLNLIFGVIIDTF
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Known secondary structure (DSSP)











S






SS
S
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence ADLRSEKQKKEEILKTTCFICGLERDKFDNKTVTFEEHIKEEHNMWHYLCFIVLVKVKDSTEYTGPESYV
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Known secondary structure (DSSP) TTS
TTT
--------------------------------------------------------
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence AEMIRERNLDWFPRMRAMSLVSSDSEGEQNELRNLQEKLESTMKLVTNLSGQLSELKDQMTEQRKQKQRI
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Known secondary structure (DSSP) -------------------

-
 .........2320.......
Sequence GLLGHPPHMNVNPQQPA
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Known secondary structure (DSSP) -----------------


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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