PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3j9vM_

Fold library id	PDB Header	Molecule	Title
c3j9vM_	PDB header: hydrolase	Chain: M: PDB Molecule: v-type proton atpase subunit d;	PDBTitle: yeast v-atpase state 3

Links to external resources
Added to library: Sat May 16 08:17:29 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V F P T R M T L G L M K T K L K G A N Q G Y S L L K R K S E A L T K R F R D I T K R I D D A K Q K M G R V M Q T A A F S L A E V S Y A T G E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N I G Y Q V Q E S V S T A R F K V R A R Q E N V S G V Y L S Q F E S Y I D P E I N D F R L T G L G R G G Q Q V Q R A K E I Y S R A V E T L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S T T
S
S
S S S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E L A S L Q T A F I I L D E V I K V T N R R V N A I E H V I I P R T E N T I A Y I N S E L D E L D R E E F Y R L K K V Q E K K Q N E T A K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	F	P	T	R	M	T	L	G	L	M	K	T	K	L	K	G	A	N	Q	G	Y	S	L	L	K	R	K	S	E	A	L	T	K	R	F	R	D	I	T	K	R	I	D	D	A	K	Q	K	M	G	R	V	M	Q	T	A	A	F	S	L	A	E	V	S	Y	A	T	G	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S																																																																S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	I	G	Y	Q	V	Q	E	S	V	S	T	A	R	F	K	V	R	A	R	Q	E	N	V	S	G	V	Y	L	S	Q	F	E	S	Y	I	D	P	E	I	N	D	F	R	L	T	G	L	G	R	G	G	Q	Q	V	Q	R	A	K	E	I	Y	S	R	A	V	E	T	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S		S											T	T													S		S			S	S	S		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	L	A	S	L	Q	T	A	F	I	I	L	D	E	V	I	K	V	T	N	R	R	V	N	A	I	E	H	V	I	I	P	R	T	E	N	T	I	A	Y	I	N	S	E	L	D	E	L	D	R	E	E	F	Y	R	L	K	K	V	Q	E	K	K	Q	N	E	T	A	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																													T