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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3j9vC_

Fold library idPDB HeaderMoleculeTitle
c3j9vC_PDB header: hydrolaseChain: C: PDB Molecule: v-type proton atpase catalytic subunit a;PDBTitle: yeast v-atpase state 3


Added to library: Sat May 16 08:20:15 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence YGAIYSVSGPVVIAENMIGCAMYELVKVGHDNLVGEVIRIDGDKATIQVYEETAGLTVGDPVLRTGKPLS
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Known secondary structure (DSSP)

TTS

S

SSTTTTTT
S

TT

TT


 .........80.........90.........100.........110.........120.........130.........140
Sequence VELGPGLMETIYDGIQRPLKAIKEESQSIYIPRGIDTPALDRTIKWQFTPGKFQVGDHISGGDIYGSVFE
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Known secondary structure (DSSP) SSS
TT

TT

BS
SS

SS



SS

SS
S

TT
TT


 .........150.........160.........170.........180.........190.........200.........210
Sequence NSLISSHKILLPPRSRGTITWIAPAGEYTLDEKILEVEFDGKKSDFTLYHTWPVRVPRPVTEKLSADYPL
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Known secondary structure (DSSP) SSSS
S

SS


SSSSSSSS
TTS



S


S
 .........220.........230.........240.........250.........260.........270.........280
Sequence LTGQRVLDALFPCVQGGTTCIPGAFGCGKTVISQSLSKYSNSDAIIYVGCGERGNEMAEVLMEFPELYTE
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Known secondary structure (DSSP)



S
TT



SSS



SSSB
STTTS

T
 .........290.........300.........310.........320.........330.........340.........350
Sequence MSGTKEPIMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDQGKNVSMIADSSSRWAEALREISGRLGE
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Known secondary structure (DSSP) T


SST

BSSS
T

TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence MPADQGFPAYLGAKLASFYERAGKAVALGSPDRTGSVSIVAAVSPAGGDFSDPVTTATLGITQVFWGLDK
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Known secondary structure (DSSP)


GGG

ST

SSTT



SSSSS
S
S


 .........430.........440.........450.........460.........470.........480.........490
Sequence KLAQRKHFPSINTSVSYSKYTNVLNKFYDSNYPEFPVLRDRMKEILSNAEELEQVVQLVGKSALSDSDKI
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Known secondary structure (DSSP) TS
SS


GGGSSS

T
STTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence TLDVATLIKEDFLQQNGYSTYDAFCPIWKTFDMMRAFISYHDEAQKAVANGANWSKLADSTGDVKHAVSS
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Known secondary structure (DSSP)



SSSTTT


TS

TG
 .........570.........580.........590...
Sequence SKFFEPSRGEKEVHGEFEKLLSTMQERFAESTD
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Known secondary structure (DSSP) GGTS
SS
BTTTB


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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