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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3j9pD_

Fold library idPDB HeaderMoleculeTitle
c3j9pD_PDB header: transport proteinChain: D: PDB Molecule: maltose-binding periplasmic protein, transient receptorPDBTitle: structure of the trpa1 ion channel determined by electron cryo-2 microscopy


Added to library: Sat Apr 11 11:57:02 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQLLLKKGALFLSDHNGW
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Known secondary structure (DSSP)


T
TTT

STTSS


SS


TT







SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence TALHHASMGGYTQTMKVILDTNLKCTDRLDEDGNTALHFAAREGHAKAVALLLSHNADIVLNKQQASFLH
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Known secondary structure (DSSP)
TTTT


SSTT



SSS

TSSS
TTT






SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence LALHNKRKEVVLTIIRSKRWDECLKIFSHNSPGNKCPITEMIEYLPECMKVLLDFCMLHSTEDKSCRDYY
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Known secondary structure (DSSP) TTT
SSS
SS




SSSS

SSSTTTS



S
SSS






S
 .........220.........230.........240.........250.........260.........270.........280
Sequence IEYNFKYLYEPLTALNAMVQNNRIELLNHPVCKEYLLMKWLAYGFRAHMMNLGSYCLGLIPMTILVVNIK
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TTTTS


SSTT
TTTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence PGMAFNTTNSYLIKTCMILVFLSSIFGYISNVLEWIIYTTGIIFVLPLFVEIPAHLQWQCGAIAVYFYWM
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Known secondary structure (DSSP) SS
S




TT

GGGSS


S
 .........360.........370.........380.........390.........400.........410.........420
Sequence NFLLYLQRFENCGIFIVMLEVILKTLLRSTVVFIFLLLAFGLSFYILLNLQDPFSSPLLSIIQTFSMMLG
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Known secondary structure (DSSP) TTSSSSSTTT
SSSS

STS
 .........430.........440.........450.........460.........470.........480.........490
Sequence DINYRESFLEPYLRNELAHPVLSFAQLVSFTIFVPIVLMNLLIGLAVGDIADVQKHASLKRIAMQVELHT
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Known secondary structure (DSSP)



STTTT
SS
TTTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence SLEKKLPLWFLRKVDQKSTIVYQEIPNADKSLEMEILKQKYRLKDLTFLLEKQHELIKLIIQKMEIISET
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Known secondary structure (DSSP) TTS
TTSSSSS

S






S
SS



T



S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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