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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3j9oJ_

Fold library idPDB HeaderMoleculeTitle
c3j9oJ_PDB header: structural proteinChain: J: PDB Molecule: intracellular growth locus protein b;PDBTitle: cryoem structure of a type vi secretion system


Added to library: Sat Mar 21 08:25:31 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VIDKLIDLQVNSIISNDEFRALEQEWLKVQEVCQEDYDNVEVSILDVKKEELQYDFERNLYDISSSDFFK
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Known secondary structure (DSSP)
SSSTTTGGGS

SS








STT
GGG
TTGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence KVYVSEFDQYGGEPYGAILGLYNFENTTNDIIWLTGMGMVAKNSHAPFIASIDKSFFGVKDLSEITHIKS
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Known secondary structure (DSSP) GT




SSSS




S

S
TTT



TTTTT
S
GGGGTT
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence FEALLEHPRYKEWNDFRNLDVAAYIGLTVGDFMLRQPYNPENNPVQYKLMEGFNEFVDYDKNESYLWGPA
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Known secondary structure (DSSP) TTSGGGTTSSGGGS








SSSS




SSS

SS





SS
S

T
 .........220.........230.........240.........250.........260.........270.........280
Sequence SIHLVKNMMRSYDKTRWFQYIRGVESGGYVKNLVACVYDNKGILETKSPLNVLFADYMELSLANIGLIPF
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Known secondary structure (DSSP) SSSSSSTTSTTTTS



S



SSSS

SBS



TTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence VSEKGTSNACFFSVNSAKKVEEFVDGFDSANSRLIANLSYTMCISRISHYIKCVIRDKIGSIVDVESIQK
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Known secondary structure (DSSP) TTTT



B
SS




SSSBTTTTSSS


 .........360.........370.........380.........390.........400.........410.........420
Sequence ILSDWISEFVTTVYQPTPLEMARYPFRNVSIEVKTIPGKPGWYSCKINVIPHIQFEGMNTTMTIDTRLEP
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Known secondary structure (DSSP) GGGB
SS

SSST




SS
SS
















S
S
 .......
Sequence ELFGTNN
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Known secondary structure (DSSP) SS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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