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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3j9eD_

Fold library idPDB HeaderMoleculeTitle
c3j9eD_PDB header: viral proteinChain: D: PDB Molecule: vp5;PDBTitle: atomic structure of a non-enveloped virus reveals ph sensors for a2 coordinated process of cell entry


Added to library: Sat Dec 12 08:17:03 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GKVIRSLNRFGKKVGNALTSNTAKKIYSTIGKAAERFAESEIGSAAIDGLVQGSVHSIITGESYGESVKQ
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Known secondary structure (DSSP)

B

B


SS









T
SGGGTTT
S



 .........80.........90.........100.........110.........120.........130.........140
Sequence AVLLNVLGSGEEIPDPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAE
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Known secondary structure (DSSP) S



SS




TT
TTTTTS
SSSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence IEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDG
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Known secondary structure (DSSP)





TTS

TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence MQEEAIQEIAGMTADVLEAASEEVPLIGAGMATAVATGRAIEGAYKLKKVINALSGIDLTHLRTPKIEPS
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Known secondary structure (DSSP) S
TT
S



TT
S

SS


S
SS


STTTTSS


TT



SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence VVSTILEYRAKEIPDNALAVSVLSKNRAIQENHKELMHIKNEILPRFKKAMDEEKEICGIEDKVIHPKVM
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Known secondary structure (DSSP) STTS


T


SSS

 .........360.........370.........380.........390.........400.........410.........420
Sequence MKFKIPRAQQPQIHVYSAPWDSDDVFFFHCISHHHANESFFLGFDLSIDLVHYEDLTAHWHALGAAQTAA
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Known secondary structure (DSSP) S


GGGSSS
SSS
SS


GGG


TTTTB



STT






 .........430.........440.........450.........460.........470.........480.........490
Sequence GRTLTEAYREFLNLAISNAFGTQMHTRRLVRSKTVHPIYLGSLHYDISFSDLRGNAQRIVYDDELQMHIL
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Known secondary structure (DSSP) SB
T

SSSS



GGG








S

S
 .........500.........510.........520
Sequence RGPIHFQRRAILGALKFGCKVLGDRLDVPL
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Known secondary structure (DSSP)
SST










Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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