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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3j9bA_

Fold library idPDB HeaderMoleculeTitle
c3j9bA_PDB header: rna binding protein/transferase/rnaChain: A: PDB Molecule: polymerase;PDBTitle: electron cryo-microscopy of an rna polymerase


Added to library: Sat Feb 21 08:13:33 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFLKTTPRPLRLPDGPPCS
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S








S










SB

 .........80.........90.........100.........110.........120.........130.........140
Sequence QRSKFLLMDALKLSIEIPLYDAIKCMKTFFGWKEPNIVKPHEKGINPNYLLAWKQVLAELQDIENEEKIP
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Known secondary structure (DSSP)


SS
STT




TT




SSS
S



 .........150.........160.........170.........180.........190.........200.........210
Sequence KTKNMRKTSQLKWALGDSDEPKPRSLASWIQSEFNKACELTDSSWIELDEIIEHIASMRRNYFTAEVSHC
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Known secondary structure (DSSP) S








TT

S

B

S

SSB







S
 .........220.........230.........240.........250.........260.........270.........280
Sequence RATEYIMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDVVNFVSM
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Known secondary structure (DSSP) TSSS

SS







TTT

 .........290.........300.........310.........320.........330.........340.........350
Sequence EFSLTDPRLEPHKWEKYCVLEIGDMLLRTEIGQVSRPMFLYVRTNGTSKIKMKWGMEMRRCLLQSLQQIE
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Known secondary structure (DSSP)


TTSSGGGGTT


TTS

T
 .........360.........370.........380.........390.........400.........410.........420
Sequence SMIEAESSVKEKDMTKEFFENKSETWPIGESPKGMEEGSIGKVCRTLLAKSVFNSLYASPQLEGFSAESR
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Known secondary structure (DSSP) TTS

S

TTS

TT


TT

 .........430.........440.........450.........460.........470.
Sequence KLLLIVQALRDNLEPGTFDLGGLYEAIEECLINDPWVLLNASWFNSFLTHA
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Known secondary structure (DSSP) T




S



SST


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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