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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3j8eG_

Fold library idPDB HeaderMoleculeTitle
c3j8eG_PDB header: transport protein/isomeraseChain: G: PDB Molecule: ryanodine receptor 1;PDBTitle: cryo-em structure of ryanodine receptor/calstabin-2 complex


Added to library: Sat Dec 13 12:50:38 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QFLRTDDEVVLQCSATVLKEQLKLCLAAEGFGNRLCFLEPTSNAQNVPPDLAICCFTLEQSLSVRALQEM
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)
B

SS


TT


SS

B



TTTTTS


TTTT
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence LANGHRTLLYGHAILLRHAHSRMYLSCLTTSRKLAFDVGLQEDATGEACWWTMHPASKQRSEGEKVRVGD
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP) SS



S
BTTTTT


S

SSSSSS

SSTT
SSSSS
TTSB
BTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence DLILVSVSSERYLHLSTLQVDASFMQTLWNMNPICSCCEEGYVTGGHVLRLFHGECLTISAADSDDQRRL
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP)
BBSSS

B



SSS
BSS








TTB
BTT
SSS



TT
TTTT

 .........220.........230.........240.........250.........260.........270.........280
Sequence VYYEGGAVCTHARSLWRLEPLRISWSGSHLRWGQPLRIRHVTTGRYLALTEDQGLVVVDACKAHTKATSF
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP)
B
GGGGGSSSS
S
STTTTSB

SS

SSS

B

B
SSSSB

B
STT

 .........290.........300.........310.........320.........330.........340.........350
Sequence CFRVSKEKLKRDVEGMGPPEIKYGESLCFVQHVASGLWLTYAAVLKKKAILHQEGHMDDALFLTRCQQEE
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP) SSSS





SSS




BTTT

B

SSS




SSSB



SS

TT

B

 .........360.........370.........380.........390.........400.........410.........420
Sequence SQAARMIHSTAGLYNQFIKGLDSFSGKPRLPIEAVILSLQDLIGYFEPPSEELQHEEKQSKLRSLRNRQS
Predicted secondary structure










SS confidence





































































Known secondary structure (DSSP) TT



S



TTST
 .........430.........440.........450.........460.........470.........480.........490
Sequence LFQEEGMLSLVLNCIDRLNVYTTAAHFAEYAGEEAAESWKEIVNLLYELLASLIRGNRANCALFSTNLDW
Predicted secondary structure






SS confidence





































































Known secondary structure (DSSP) TTT
STTTTTTTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence VVSKLDRLEASSGILEVLYCVLIESPEVLNIIQENHIKSIISLLDKHGRNHKVLDVLGRAEGSTQYGKWY
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP) T
SS
TSSB
S


SSS
B
 .........570.........580.........590.........600.........610.........620.........630
Sequence FEVMVDEVVPFLTAQATHLRVGWALTEGYSPYPGGGEGWGGNGVGDDLYSYGFDGLHLWTGHVARPVTSP
Predicted secondary structure
















































SS confidence





































































Known secondary structure (DSSP)



B


S


B


TTS
SSSS
TT




GGG

SSTT
BTTSS

 .........640.........650.........660.........670.........680.........690.........700
Sequence GQHLLAPEDVVSCCLDLSVPSISFRINGCPVQGVFEAFNLDGLFFPVVSFSAGVKVRFLLGGFVPCPVDT
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP)
S



TT

TTTTTTS
S
SS



B

B
SS

B
SS










 .........710.........720.........730.........740.........750.........760.........770
Sequence VQIVLPPHLERIREKLAENIHELWALTRIEQGWTYGPVRDDNKRLHPCLVNFHSLPEPERNYNLQMSGET
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP) TT



TTTTS
B

SS
BTTTTB



SSGGGS
 .........780.........790.........800.........810.........820.........830.........840
Sequence LKTLLALGCHVGMATPAQTTLVDRLAENGHNVWARDRVAQGWSYSRNPRLVPYRLLDEATKRSNRDSLCQ
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP) T


SS

SS
GGGTTTTT
S
SS


TTTS
 .........850.........860.........870.........880.........890.........900.........910
Sequence AVRTLLGYGYNIENQSRWDRVRIFRAEKSYTVQSGRWYFEFEAVTTGEMRVGWARPELRPDVELGADELA
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP) S









SS



SS

SSS



SS
S
B
TTS
SSS
SSSSTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence YVFNGHRGQRWHLGSEPFGRPWQSGDVVGCMIDLTENTIIFTLNGEVLMSDSGSETAFREIEIGDGFLPV
Predicted secondary structure


































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Known secondary structure (DSSP)
TTTT
SSS

S



SS
TTTTTT

B
TTSSB
S

SSS

B

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence CSLGPGQVGHLNLGQDVSSLRFFAICGLQEGFEPFATTTYYYSVRVFAGQEPSCVWVGWVTPDYHQHDMM
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP)
SS



BTTTTT

S
SS

TTTTTTS







SS



TT

S
B
TTS
SSS
S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence GDEQGNVHSSLKCSNCYMVWGGDFVSPGQQGRISHTDLVIGCLVDLATGLMTFTANGKESNTFFQVEPNT
Predicted secondary structure







































SS confidence





































































Known secondary structure (DSSP) SSSTTBTTTT


SSS



S



TT
TTTTTTS

SS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence KLFPAVFVLPTHQNVIQFELGKQKNIMPLEDAHLPGPLRAGYYDLHLESACRSRRSMLSEYIVPLTPETR
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP)

B

SS
TT


SSSSSS






ST

SS


TTS
SSSSS



 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence AITLFPPGRKGGNARRHGLPGVGVTTSLRPPHHFSPPCFVAALPAAGVAEAPARLSPAIPLEALRDKALR
Predicted secondary structure














































SS confidence





































































Known secondary structure (DSSP) SS
TTTTTTST

SSS

TTTTT
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence MLGEAVRDGGQHARDPVGGSVEFQFVPVLKLVSTLLVMGIFGDEDVKQILKMIEPEVFTEEEEEKLQMCN
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) SSS
TTTTTS

STTTTS
S
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence LLEYFCDQELQHRVESLAAFAERYVDKLQANQRSRYALLMRAFTMSAAETARRRSPPQEQINMLLHFKDE
Predicted secondary structure












SS confidence





































































Known secondary structure (DSSP)
S



S



SS
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence ADEEDCPLPEDIRQDLQDFHQDLLAHCGIQLEGEEEEPEEETSLSSRLRSLLETVRLVKKKEEKPEEELP
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP) T



TSS


TT
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence AEEKKPQSLQELVSHMVVRWAQEDYVQSPELVRLLHRQYDGLGELLRALPRAYTISPSSVEDTMSLLECL
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP) S
S


SSS






SS




SSSSSS
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence GQIRSLLIVQMGPQEENLMIQSIGNIMNNKVFYQHPNLMRALGMHETVMEVMVNVLGGGETKEIRFPKMV
Predicted secondary structure


















SS confidence





































































Known secondary structure (DSSP) S
SS



SSS



S
SS

TT
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence TSCCRFLCYFCRISRQNQRSMFDHLSYLLENSGIGLGMQGSTPLDVAAASVIDNNELALALQEQDLEKVV
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP) TSS
T

SSS

ST
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence SYLAGCGLQSCPMLLAKGYPDIGWNPCGGERYLDFLRFAVFVNGESVEENANVVVRLLIRKPECFGPALR
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP) S

S

SS
TTTSSSTSSTTT
SS

TTS
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence GEGGSGLLAAIEEAIRISEDPARDGPGVRRDRRREHFGEEPPEENRVHLGHAIMSFYAALIDLLGRCAPE
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP)


TTS







TTT

S

SSSS
S
SS
S
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence MHLIQAGKGEALRIRAILRSLVPLDDLVGIISLPLQIPTLGKDGALVQPKMSASFVPDHKASMVLFLDRV
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP)



S

S
ST
STTTTT

SS


S

TTS
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence YGIENQDFLLHVLDVGFLPDMRAAASLDTATFSTTEMALALNRYLCLAVLPLITKCAPLFAGTEHRAIMV
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)


SSTT

SSS




S
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence DSMLHTVYRLSRGRSLTKAQRDVIEDCLMALCRYIRPSMLQHLLRRLVFDVPILNEFAKMPLKLLTNHYE
Predicted secondary structure








SS confidence





































































Known secondary structure (DSSP) T
TTSTTT

S

T
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence RCWKYYCLPTGWANFGVTSEEELHLTRKLFWGIFDSLAHKKYDQELYRMAMNFDPRPVETLNVIIPEKLD
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP) TSSS


SSSTT



TTS











SS



TT
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence SFINKFAEYTHEKWAFDKIQNNWSYGENVDEELKTHPMLRPYKTFSEKDKEIYRWPIKESLKAMIAWEWT
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP) TT

SS
BTTTTGGGS
TTT

TT

 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence IEKAREGEYNPQPPDLSGVTLSRELQAMAEQLAENYHNTWGRKKKQELEAKGGGTHPLLVPYDTLTAKEK
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)



S



SSS



TT



TT



TT
S
GGGS
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence ARDREKAQELLKFLQMNGYAVTRLQQLLRWMDISQEFIAHLEAVVSSGRVEKSPHEQEIKFFAKILLPLI
Predicted secondary structure










SS confidence





































































Known secondary structure (DSSP) S







SSS
S
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence NQYFTNHCLYFLSTPAKVLGSGGHASNKEKEMITSLFCKLAALVRHRVSLFGTDAPAVVNCLHILARSLD
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP) TS



S
TSS
SS
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence ARTVMKSGPEIRSFFESASEDIEKMVENLRLGKVSQARTQVKGVGQNLTYTTVALLPVLTTLFQHIAQHQ
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP) TTSS

ST




TTSS
SS


 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence FGDDVILDLCSIYSLGTTKNTYVEKLRPALGECLARLAAAMPVAFLEPQLNEYNACSVYTTKSPRERAIL
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP) TT


SS
S
S
TT
S

T
ST
 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence GLPNSVEEMCPDIPVLDRLMADIGGLAESGARYTEMPHVIEITLPMLCSYLPRWWERGPEAPPPALPAGA
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) T

TTTTTTS

STTTSS
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence PPPCTAVTSDHLNSLLGNILRIIVNNLGIDEATWMKRLAVFAQPIVSRARPELLHSHFIPTIGRLRKRAG
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP) STTSSS
SSSTT
ST
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence KVVAEEEQLRLELLVRDEFSVLCRDLYALYPLLIRYVDNNRAHWLTEPNANAEELFRMVGEIFIYWSKSH
Predicted secondary structure







SS confidence





































































Known secondary structure (DSSP) S



S

S
TSS
S
S
S



 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence NFKREEQNFVVQNEDSKSKMAKAGDAQSGGSDQERTKKKRSKAGEQEEEEEEVEEKKPDPLHQLVLHFSR
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP)




S









SSS





S
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence TALTEKSKLDEDYLYMAYADIMAKSCHLEEGGENGEAEEEEVEVSFEEKEMEKQRLLYQQSRLHTRGAAE
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP) TTS




S



TTTSS

SS

 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence MVLQMISACKGETGAMVSSTLKLGISILNGGNAEVQQKMLDYLKDKKEVGFFQSIQALMQTCSVLDLNAF
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP) TTT
SSSTSSSSS

 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence ERQNKAEGLGMVNEDGTVINRQNGEKVMADDEFTQDLFRFLQLLCEGHNNDFQNYLRTQTGNTTTINIII
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) S




STT
S







SS

ST
STTTTT
SSS
 .........3020.........3030.........3040.........3050.........3060.........3070.........3080
Sequence CTVDYLLRLQESISDFYWYYSGKDVIEEQGKRNFSKAMSVAKQVFNSLTEYIQGPCTGNQQSLAHSRLWD
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP) S


TTS


TTTTSSSS
ST
 .........3090.........3100.........3110.........3120.........3130.........3140.........3150
Sequence AVVGFLHVFAHMMMKLAQDSSQIELLKELLDLQKDMVVMLLSLLEGNVVNGMIARQMVDMLVESSSNVEM
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP) TT
SS
S



SSSS
 .........3160.........3170.........3180.........3190.........3200.........3210.........3220
Sequence ILKFFDMFLKLKDIVGSEAFQDYVTDPRGLISKKDFQKAMDSQKQFTGPEIQFLLSCSEADENEMINFEE
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP)


TT


TTTSS





SS


 .........3230.........3240.........3250.........3260.........3270.........3280.........3290
Sequence FANRFQEPARDIGFNVAVLLTNLSEHVPHDPRLRNFLELAESILEYFRPYLGRIEIMGASRRIERIYFEI
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP)

ST






SSS





 .........3300.........3310.........3320.........3330.........3340.........3350.........3360
Sequence SETNRAQWEMPQVKESKRQFIFDVVNEGGEAEKMELFVSFCEDTIFEMQIAAQISEEGEAGMEFWGELEV
Predicted secondary structure





SS confidence





































































Known secondary structure (DSSP)


TTTTSSS

S
S





SSS
 .........3370.........3380.........3390.........3400.........3410.........3420.........3430
Sequence QRVKFLNYLSRNFYTLRFLALFLAFAINFILLFYKVSDSPFLCIIGYNCLKVPLVIFKREKELARKLEFD
Predicted secondary structure












SS confidence





































































Known secondary structure (DSSP) GGGTSSSSTSSS



S
 .........3440.........3450.........3460.........3470.........3480.........3490.........3500
Sequence GLYITEQPGDDDVKGQWDRLVLNTPSFPSNYWDKFVKRKVLDKHGDIFGRERIAELLGMDLASLEITAHN
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP)
SSS
SSTTTTS

SSS
T
 .........3510.........3520.........3530.........3540.........3550.........3560.........3570
Sequence ERKPDPPPYQIWKFGVIFTDNSFLYLGWYMVMSLLGHYNNFFFAAHLLDIAMGVKTLRTILSSVTHNGKQ
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP) T


S






STSTTSSS
 .........3580.........3590.........3600.........3610.........3620.........3630.........3640
Sequence LVMTVGLLAVVVYLYTVVAFNFFRKFYNKSEDEDEMMTCYLFHMYVGVRAGGGIGDEIEDPAGDEYELYR
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP) TT

S




SSS



SS
SS

SS

TTT
 .........3650.........3660.........3670.........3680.........3690.........3700.........3710
Sequence VVFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVKEDMETKCFICGIGSDYFDTTPHGFETHTLEEH
Predicted secondary structure












SS confidence





































































Known secondary structure (DSSP) T

TTS




SSS
TS
 .........3720.........3730.........3740.........3750.
Sequence NLANYMFFLMYLINKDETEHTGQESYVWKMYQERCWDFFPA
Predicted secondary structure

















SS confidence








































Known secondary structure (DSSP) TS
TTS


S
S
S
SS
TTTS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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