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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3j8dD_

Fold library idPDB HeaderMoleculeTitle
c3j8dD_PDB header: virus/immune systemChain: D: PDB Molecule: antibody e111 fab fragment;PDBTitle: cryoelectron microscopy of dengue-fab e104 complex at ph 5.5


Added to library: Sat Nov 15 08:56:17 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NIVLTQSPASLAVSLGQRATISCRASESVDSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSETD
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SSSB



TTS
SS

TT


TTS

TTT
TTS
TT

SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence FTLTIDSVETDDAATYYCQQNNEDPYTFGGGTKLEIKQVQLLQPGAELVKPGASMKLSCKASGYTFTNWW
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Known secondary structure (DSSP) SS

TT

S


SSSS




B
S





B

S




TT



B

B

SS
GGGS
 .........150.........160.........170.........180.........190.........200.........210
Sequence MHWVRLRPGRGLEWIGRIDPNSDVNKYNEKFENRASLTVDKHSSTAYMQLTSEDSAIYYCARWFFPWYFD
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TTT

-TTTT
SGGGTTT




BTTTTB

B

SSS
S

SSS
-
 .........220.........230.........240.........250.........260.........270.........280
Sequence VWGTGTTVTVSRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQ
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SS




S









SST








S


S






SSS



SS







 .........290.........300.........310.........320.........330.........340.........350
Sequence DSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRSAKTTAPSVYPLAPVCGGTTGSSVT
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SSTT
SSS

 .........360.........370.........380.........390.........400.........410.........420
Sequence LGCLVKGYFPEPVTLTWNSGSLSSGVHTFPALLQSGLYTLSSSVTVTSNTWPSQTITCNVAHPASSTKVD
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S
BSS




SSSGGG
SS







SSSS









SSSTTSS







SSTT



 .....
Sequence KKIES
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Known secondary structure (DSSP)





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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