PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3j6vO_

Fold library id	PDB Header	Molecule	Title
c3j6vO_	PDB header: ribosome	Chain: O: PDB Molecule: 28s ribosomal protein s15, mitochondrial;	PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome

Links to external resources
Added to library: Sat Jun 21 08:22:49 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T Q K P V Q Q S Q E D D P P P S M L L K D Y Q N V P G I E K V D D V V K R L I S L E M A N K K E M L K I K K E Q L M S K V V E N P K D T S S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S T
S S T T T T S
S T T S
S S
S S T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L E A Q I V A L T V K I R S Y E E H M Q K H Q K D K A H K R Y L L M S I D K R Q K M L K N L R K T N Y P V F E K T C K E L G I E Y T F P P P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
S S S
S
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . .

Sequence Y H R K I H R R L A T K K A L C I R V F Q E V Q K L K K Q K R A L K T A A A A A Q K Q G Q R N P E S P S E A R S E A I K E T Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T
S S S
S
T T T T T S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	Q	K	P	V	Q	Q	S	Q	E	D	D	P	P	P	S	M	L	L	K	D	Y	Q	N	V	P	G	I	E	K	V	D	D	V	V	K	R	L	I	S	L	E	M	A	N	K	K	E	M	L	K	I	K	K	E	Q	L	M	S	K	V	V	E	N	P	K	D	T	S	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S												S	S							T		S	S	T	T	T	T									S		S							T	T	S									S	S		S	S	T	T		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	E	A	Q	I	V	A	L	T	V	K	I	R	S	Y	E	E	H	M	Q	K	H	Q	K	D	K	A	H	K	R	Y	L	L	M	S	I	D	K	R	Q	K	M	L	K	N	L	R	K	T	N	Y	P	V	F	E	K	T	C	K	E	L	G	I	E	Y	T	F	P	P	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																							S		T	T																									S										S	S		S						T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Sequence	Y	H	R	K	I	H	R	R	L	A	T	K	K	A	L	C	I	R	V	F	Q	E	V	Q	K	L	K	K	Q	K	R	A	L	K	T	A	A	A	A	A	Q	K	Q	G	Q	R	N	P	E	S	P	S	E	A	R	S	E	A	I	K	E	T	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	T	T				S	S	S		S			T	T	T																	T	T										S		S