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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3j6rC_

Fold library idPDB HeaderMoleculeTitle
c3j6rC_PDB header: virusChain: C: PDB Molecule: major capsid protein l1;PDBTitle: electron cryo-microscopy of human papillomavirus type 16 capsid


Added to library: Sat Jul 26 09:42:45 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLP
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Known secondary structure (DSSP)



S









S
S

S
BSS


SSSSS
B

TTB


 .........80.........90.........100.........110.........120.........130.........140
Sequence DPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECIS
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Known secondary structure (DSSP)
TTTS

S

SS

TTT

S





S
B
SS
SS





S

 .........150.........160.........170.........180.........190.........200.........210
Sequence MDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKS
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Known secondary structure (DSSP)

SS





TTTT
STTS




TT


SS
SBB
SSS
SSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence EVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLAS
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Known secondary structure (DSSP) SS
TTTTTSB
S
SS

S
S

S



S



SSS


SGGGGS


 .........290.........300.........310.........320.........330.........340.........350
Sequence SNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNT
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Known secondary structure (DSSP)






SSS


SS

SS
SSSS
SB
SSS
SS
S

S
SS

TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence NFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIAC
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Known secondary structure (DSSP) T

TTTT





S



S

S
SS

SSSS
 .........430.........440.........450.........460.........470........
Sequence QKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGLKAKPKFTLGKRK
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Known secondary structure (DSSP) S

S






SS
SS


TT

BS

SSSSSS









-


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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