PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3j61G_

Fold library id	PDB Header	Molecule	Title
c3j61G_	PDB header: ribosome	Chain: G: PDB Molecule: 60s ribosomal protein l8e;	PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome

Links to external resources
Added to library: Mon Feb 10 11:16:42 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N P L F E K R P K Q F G I G G A L P P K K D L H R F V K W P K V V R I Q R Q R R I L K Q R L K V P P A L N Q F T R T L D K N L A T N L F K M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
S S S S S
T T T S
S
S S S S S T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L L K Y R P E D K A A K K E R L L K R A Q A E A E G K T V E A K K P I V V K Y G L N H V T Y L I E Q S K A Q L V V I A H D V D P I E L V V W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S T
S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L P A L C R K M E V P Y C I V K G K A R L G S I V H K K T A S V L C L T T V K N E D K L E F S K I L E A I K A N F N D K F D E V R K K W G G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
T S S
S
T T T
S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . .

Sequence G V M G S K S Q A K T K A R E K L L A K E A A Q R M T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	P	L	F	E	K	R	P	K	Q	F	G	I	G	G	A	L	P	P	K	K	D	L	H	R	F	V	K	W	P	K	V	V	R	I	Q	R	Q	R	R	I	L	K	Q	R	L	K	V	P	P	A	L	N	Q	F	T	R	T	L	D	K	N	L	A	T	N	L	F	K	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S		S							S	S	S	S	S								T	T	T	S																			S				S	S	S	S	S	T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	L	K	Y	R	P	E	D	K	A	A	K	K	E	R	L	L	K	R	A	Q	A	E	A	E	G	K	T	V	E	A	K	K	P	I	V	V	K	Y	G	L	N	H	V	T	Y	L	I	E	Q	S	K	A	Q	L	V	V	I	A	H	D	V	D	P	I	E	L	V	V	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																										T														S											T			S						S			S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	P	A	L	C	R	K	M	E	V	P	Y	C	I	V	K	G	K	A	R	L	G	S	I	V	H	K	K	T	A	S	V	L	C	L	T	T	V	K	N	E	D	K	L	E	F	S	K	I	L	E	A	I	K	A	N	F	N	D	K	F	D	E	V	R	K	K	W	G	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T							S										T	S	S								S																		T	T	T			S							S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Sequence	G	V	M	G	S	K	S	Q	A	K	T	K	A	R	E	K	L	L	A	K	E	A	A	Q	R	M	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)