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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3j5pB_

Fold library idPDB HeaderMoleculeTitle
c3j5pB_PDB header: transport proteinChain: B: PDB Molecule: transient receptor potential cation channel subfamily vPDBTitle: structure of trpv1 ion channel determined by single particle electron2 cryo-microscopy


Added to library: Sat Dec 7 09:00:38 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA
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Known secondary structure (DSSP)


TT
SSTTTTS


TTSGGGS
TTT


S
BTTB
 .........80.........90.........100.........110.........120.........130.........140
Sequence RKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGEL
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Known secondary structure (DSSP) TT
T



STTTTT

TT
TT

TT

B
SGGGS

SSS



S
BS
 .........150.........160.........170.........180.........190.........200.........210
Sequence PLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLH
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Known secondary structure (DSSP) TT

SS



TT


TTS



S

 .........220.........230.........240.........250.........260.........270.........280
Sequence PTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHLSRKFTEWAYGPVHSSLYDLSCIDTC
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Known secondary structure (DSSP) TT


TT


TTS

TT
T



STT
S




TT




 .........290.........300.........310.........320.........330.........340.........350
Sequence EKNSVLEVIAYSSSETPNRHDMLLVEPLNRLLQDKWDRFVKRIFYFNFFVYCLYMIIFTAAAYYRPVEGL
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Known secondary structure (DSSP) SS

T

S
STTTTTGGGST


SSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence PPYKLKNTVGDYFRVTGEILSVSGGVYFFFRGIQYFLQRRPSVDSYSEILFFVQSLFMLVSVVLYFSQRK
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Known secondary structure (DSSP) S




SSTT




ST
T
 .........430.........440.........450.........460.........470.........480.........490
Sequence EYVASMVFSLAMGWTNMLYYTRGFQQMGIYAVMIEKMILRDLCRFMFVYLVFLFGFSTAVVTLIEDGKYN
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Known secondary structure (DSSP) TGGGGGTTS

SSSSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence SLYSTCLELFKFTIGMGDLEFTENYDFKAVFIILLLAYVILTYILLLNMLIALMGETVNKIAQESKNIWK
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Known secondary structure (DSSP) ST


SS




SST
 .........570.........580.........590..
Sequence LQRAITILDTEKSFLKCMRKAXXXXXXXXXXX
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Known secondary structure (DSSP) TTTS
S









Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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