PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3j4rA_

Fold library id	PDB Header	Molecule	Title
c3j4rA_	PDB header: transferase	Chain: A: PDB Molecule: a-kinase anchor protein 18;	PDBTitle: pseudo-atomic model of the akap18-pka complex in a linear conformation2 derived from electron microscopy

Links to external resources
Added to library: Sat Nov 16 08:50:03 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Y Q P N Y F L S I P I T N K K I T A G I K V L Q N S I L R Q D N R L T K A M V G D G S F H I T L L V M Q L L N E D E V N I G T D A L L E L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G G G B
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P F V E E I L E G K H L T L P F H G I G T F Q G Q V G F V K L A D G D H V S A L L E I A E T A K R T F Q E K G I L A G E S R T F K P H L T F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
T T T
S T T T
B
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence M K L S K A P M L W K K G V R K I E P G L Y E Q F I D H R F G E E I L Y Q I D L C S M L K K K Q S N G Y Y H C E S S I V I G E K D R K E P E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
T T T
S
G G G G G G G T T
S S S
T T S
S S S
S S S S

. . . . . . . . . 220 . . . . . . . . . 230

Sequence D A E L V R L S K R L V E N A V L K A V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Y	Q	P	N	Y	F	L	S	I	P	I	T	N	K	K	I	T	A	G	I	K	V	L	Q	N	S	I	L	R	Q	D	N	R	L	T	K	A	M	V	G	D	G	S	F	H	I	T	L	L	V	M	Q	L	L	N	E	D	E	V	N	I	G	T	D	A	L	L	E	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																G	G	G	G	G	G	B			T	T													S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	F	V	E	E	I	L	E	G	K	H	L	T	L	P	F	H	G	I	G	T	F	Q	G	Q	V	G	F	V	K	L	A	D	G	D	H	V	S	A	L	L	E	I	A	E	T	A	K	R	T	F	Q	E	K	G	I	L	A	G	E	S	R	T	F	K	P	H	L	T	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	S													T	T	T									S																			T	T	T			B			S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	M	K	L	S	K	A	P	M	L	W	K	K	G	V	R	K	I	E	P	G	L	Y	E	Q	F	I	D	H	R	F	G	E	E	I	L	Y	Q	I	D	L	C	S	M	L	K	K	K	Q	S	N	G	Y	Y	H	C	E	S	S	I	V	I	G	E	K	D	R	K	E	P	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G		T					T	T			S			G	G	G	G	G	G	G	T	T																S	S	S				T	T	S												S	S	S		S	S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Sequence	D	A	E	L	V	R	L	S	K	R	L	V	E	N	A	V	L	K	A	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	T	T