PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3j4qC_

Fold library id	PDB Header	Molecule	Title
c3j4qC_	PDB header: transferase	Chain: C: PDB Molecule: camp-dependent protein kinase type ii-alpha regulatory	PDBTitle: pseudo-atomic model of the akap18-pka complex in a bent conformation2 derived from electron microscopy

Links to external resources
Added to library: Sat Nov 16 09:14:50 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G L T E L L Q G Y T V E V L R Q Q P P D L V D F A V E Y F T R L R E A R R Q E S D T F I V S P T T F H T Q E S S A V P V I E E D G E S D S D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S E D A D L E V P V P S K F T R R V S V C A E T F N P D E E E E D V V H P K T D E Q R C R L Q E A C K D I L L F K N L D Q E Q L S Q V L D A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
S
T T
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence M F E K I V K T D E H V I D Q G D D G D N F Y V I E R G T Y D I L V T K D N Q T R S V G Q Y D N R G S F G E L A L M Y N T P R A A T I I A T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S B
T T S
G G G G T S
B
S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence S E G S L W G L D R V T F R R I I V K N N A K K R K M F E S F I E S V P L F K S L E M S E R M K I V D V I G E K I Y K D G E R I I A Q G E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T
G G G T T
T T
T T S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence A D S F Y I I E S G E V S I L I R S K T K S N K N G G N Q E V E I A H C H K G Q Y F G E L A L V T N K P R A A S A Y A V G D V K C L V M D V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S S S S
S
S
T T
G G G G T
S
S S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . .

Sequence Q A F E R L L G P C M D I M K R N I S H Y E E Q L V K M F G S N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S G G G S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	L	T	E	L	L	Q	G	Y	T	V	E	V	L	R	Q	Q	P	P	D	L	V	D	F	A	V	E	Y	F	T	R	L	R	E	A	R	R	Q	E	S	D	T	F	I	V	S	P	T	T	F	H	T	Q	E	S	S	A	V	P	V	I	E	E	D	G	E	S	D	S	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	E	D	A	D	L	E	V	P	V	P	S	K	F	T	R	R	V	S	V	C	A	E	T	F	N	P	D	E	E	E	E	D	V	V	H	P	K	T	D	E	Q	R	C	R	L	Q	E	A	C	K	D	I	L	L	F	K	N	L	D	Q	E	Q	L	S	Q	V	L	D	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S			S															S																							T	T						T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	M	F	E	K	I	V	K	T	D	E	H	V	I	D	Q	G	D	D	G	D	N	F	Y	V	I	E	R	G	T	Y	D	I	L	V	T	K	D	N	Q	T	R	S	V	G	Q	Y	D	N	R	G	S	F	G	E	L	A	L	M	Y	N	T	P	R	A	A	T	I	I	A	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T						T	T	S	B																			T	T										S						G	G	G	G	T	S			B		S	S					S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	S	E	G	S	L	W	G	L	D	R	V	T	F	R	R	I	I	V	K	N	N	A	K	K	R	K	M	F	E	S	F	I	E	S	V	P	L	F	K	S	L	E	M	S	E	R	M	K	I	V	D	V	I	G	E	K	I	Y	K	D	G	E	R	I	I	A	Q	G	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S																																T		G	G	G	T	T																				T	T						T	T	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	A	D	S	F	Y	I	I	E	S	G	E	V	S	I	L	I	R	S	K	T	K	S	N	K	N	G	G	N	Q	E	V	E	I	A	H	C	H	K	G	Q	Y	F	G	E	L	A	L	V	T	N	K	P	R	A	A	S	A	Y	A	V	G	D	V	K	C	L	V	M	D	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T	S	S	S	S	S		S			S									T	T					G	G	G	G	T			S			S	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Sequence	Q	A	F	E	R	L	L	G	P	C	M	D	I	M	K	R	N	I	S	H	Y	E	E	Q	L	V	K	M	F	G	S	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	S	G	G	G										S