PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3j3bF_

Fold library id	PDB Header	Molecule	Title
c3j3bF_	PDB header: ribosome	Chain: F: PDB Molecule: 60s ribosomal protein l7;	PDBTitle: structure of the human 60s ribosomal proteins

Links to external resources
Added to library: Sat May 4 08:39:45 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K K R R N F A E L K I K R L R K K F A Q K M L R K A R R K L I Y E K A K H Y H K E Y R Q M Y R T E I R M A R M A R K A G N F Y V P A E P K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A F V I R I R G I N G V S P K V R K V L Q L L R L R Q I F N G T F V K L N K A S I N M L R I V E P Y I A W G Y P N L K S V N E L I Y K R G Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S
T T
S T T
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G K I N K K R I A L T D N A L I A R S L G K Y G I I C M E D L I H E I Y T V G K R F K E A N N F L W P F K L S S P R G G M K K K T T H F V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G S
S
T T B
S S
S S T T S
T T T

. . . . . . . . . 220 . . . . . . . . .

Sequence G G D A G N R E D Q I N R L I R R M N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S S T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	K	R	R	N	F	A	E	L	K	I	K	R	L	R	K	K	F	A	Q	K	M	L	R	K	A	R	R	K	L	I	Y	E	K	A	K	H	Y	H	K	E	Y	R	Q	M	Y	R	T	E	I	R	M	A	R	M	A	R	K	A	G	N	F	Y	V	P	A	E	P	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	T	T																																																							T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	F	V	I	R	I	R	G	I	N	G	V	S	P	K	V	R	K	V	L	Q	L	L	R	L	R	Q	I	F	N	G	T	F	V	K	L	N	K	A	S	I	N	M	L	R	I	V	E	P	Y	I	A	W	G	Y	P	N	L	K	S	V	N	E	L	I	Y	K	R	G	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S		S	S	S												T	T			S	T	T																			G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	K	I	N	K	K	R	I	A	L	T	D	N	A	L	I	A	R	S	L	G	K	Y	G	I	I	C	M	E	D	L	I	H	E	I	Y	T	V	G	K	R	F	K	E	A	N	N	F	L	W	P	F	K	L	S	S	P	R	G	G	M	K	K	K	T	T	H	F	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T																G	G	G	S			S													T	T								B									S	S			S	S	T	T	S		T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Sequence	G	G	D	A	G	N	R	E	D	Q	I	N	R	L	I	R	R	M	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S	S	S					T	T