PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3j3aB_

Fold library id	PDB Header	Molecule	Title
c3j3aB_	PDB header: ribosome	Chain: B: PDB Molecule: 40s ribosomal protein s3a;	PDBTitle: structure of the human 40s ribosomal proteins

Links to external resources
Added to library: Sat May 4 08:52:28 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K K V V D P F S K K D W Y D V K A P A M F N I R N I G K T L V T R T Q G T K I A S D G L K G R V F E V S L A D L Q N D E V A F R K F K L I T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
S S S S S
B T T B
T T T
S S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E D V Q G K N C L T N F H G M D L T R D K M C S M V K K W Q T M I E A H V D V K T T D G Y L L R L F C V G F T K K R N N Q I R K T S Y A Q H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T S
S S S
T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Q Q V R Q I R K K M M E I M T R E V Q T N D L K E V V N K L I P D S I G K D I E K A C Q S I Y P L H D V F V R K V K M L K K P K F E L G K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T T T T T

. . . . .

Sequence M E L H G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	K	V	V	D	P	F	S	K	K	D	W	Y	D	V	K	A	P	A	M	F	N	I	R	N	I	G	K	T	L	V	T	R	T	Q	G	T	K	I	A	S	D	G	L	K	G	R	V	F	E	V	S	L	A	D	L	Q	N	D	E	V	A	F	R	K	F	K	L	I	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S	T	T										S	S	S	S	S												B	T	T	B		T	T					T													S	S		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	D	V	Q	G	K	N	C	L	T	N	F	H	G	M	D	L	T	R	D	K	M	C	S	M	V	K	K	W	Q	T	M	I	E	A	H	V	D	V	K	T	T	D	G	Y	L	L	R	L	F	C	V	G	F	T	K	K	R	N	N	Q	I	R	K	T	S	Y	A	Q	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T													S									T	T	S												S	S	S															T	T			S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Q	Q	V	R	Q	I	R	K	K	M	M	E	I	M	T	R	E	V	Q	T	N	D	L	K	E	V	V	N	K	L	I	P	D	S	I	G	K	D	I	E	K	A	C	Q	S	I	Y	P	L	H	D	V	F	V	R	K	V	K	M	L	K	K	P	K	F	E	L	G	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				S	S										T	T	T											T	T	T
	.	.	.	.	.
Sequence	M	E	L	H	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)