PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3j39z_

Fold library id	PDB Header	Molecule	Title
c3j39z_	PDB header: ribosome	Chain: Z: PDB Molecule: 60s ribosomal protein l27;	PDBTitle: structure of the d. melanogaster 60s ribosomal proteins

Links to external resources
Added to library: Sat May 4 08:37:23 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M A S K V S R D T L Y E G V N G L L E A S A K K K R G F L E T V E L Q I G L K N Y D P Q K D K R F S G T V K L K H I P R P K M K V C I L G D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S
T T T G G G
S S S
S S
S S S S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q Q H C D E A K A N N V D F M D A E A L K K L N K N K K L V K K L A K S Y D A F L A S E S L I K Q I P R L L G P G L N K A G K F P A L L S H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
S T T S S S
S S
T T
S
S S S T T T T T
T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Q E S M I G K I E E V K S T I K F Q M K K V L C L S V A V G H V G M K S D E L A Q N V N L S I N F L V S L L K K N W Q N V R S L H V K S S M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
T T S T T S
S
T T S S S

. . . . . . .

Sequence G P P Q R L Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	A	S	K	V	S	R	D	T	L	Y	E	G	V	N	G	L	L	E	A	S	A	K	K	K	R	G	F	L	E	T	V	E	L	Q	I	G	L	K	N	Y	D	P	Q	K	D	K	R	F	S	G	T	V	K	L	K	H	I	P	R	P	K	M	K	V	C	I	L	G	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T			T	T	S				T	T	T	G	G	G							S	S	S											S	S			S	S	S	S										T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	Q	H	C	D	E	A	K	A	N	N	V	D	F	M	D	A	E	A	L	K	K	L	N	K	N	K	K	L	V	K	K	L	A	K	S	Y	D	A	F	L	A	S	E	S	L	I	K	Q	I	P	R	L	L	G	P	G	L	N	K	A	G	K	F	P	A	L	L	S	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T								T	T						S	T	T					S	S	S				S	S			T	T			S						S	S	S	T	T	T					T								T					T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Q	E	S	M	I	G	K	I	E	E	V	K	S	T	I	K	F	Q	M	K	K	V	L	C	L	S	V	A	V	G	H	V	G	M	K	S	D	E	L	A	Q	N	V	N	L	S	I	N	F	L	V	S	L	L	K	K	N	W	Q	N	V	R	S	L	H	V	K	S	S	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S							T	T								T	T	S									T	T	S																						S		T	T	S									S	S
	.	.	.	.	.	.	.
Sequence	G	P	P	Q	R	L	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S