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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | PDB Header | Molecule | Title |
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c3j39a_ | PDB header: ribosome | Chain: A: PDB Molecule: 60s ribosomal protein l8; | PDBTitle: structure of the d. melanogaster 60s ribosomal proteins |
Added to library: Sat May 4 08:39:02 2013 | |
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Links to external resources | |
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  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
Sequence | M | S | N | I | K | R | K | K | T | R | K | L | R | G | H | V | S | H | G | H | G | R | I | G | K | H | R | K | H | P | G | G | R | G | N | A | G | G | M | H | H | H | R | I | N | F | D | K | Y | H | P | G | Y | F | G | K | V | G | M | R | N | F | H | L | R | R | Q | H | K | F |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | T | T | S | S | T | T | T | T | T | T | S | T | T | T | T | S | T | T | T | S | T | T | S | S | S | T | T | T | T | T | T | S | ![]() | ![]() | ![]() | ![]() | T | T | T | S | S | S | S | S | T | T | T | T | S | S |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Sequence | R | P | E | I | N | L | D | K | L | W | S | L | V | G | A | E | K | F | A | E | L | E | K | E | K | S | T | K | A | P | V | I | D | L | V | K | F | G | Y | Y | K | L | L | G | R | G | H | L | P | A | R | P | V | I | V | K | A | K | Y | F | S | K | K | A | E | D | K | I | K | K |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | ![]() | T | T | T | T | T | S | S | ![]() | ![]() | ![]() | ![]() | T | T | S | S | S | S | S | ![]() | ![]() | ![]() | S | T | T | T | T | ![]() | ![]() | ![]() | S | S | ![]() | ![]() | ![]() | ![]() | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() |   | . | . | . | . | . | . | . | . | . | ||||||||||
Sequence | A | G | G | V | C | L | L | S | A | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | T | T | ![]() | ![]() | ![]() | ![]() |
Download: | PDB structure | FASTA sequence |
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