PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3j39G_

Fold library id	PDB Header	Molecule	Title
c3j39G_	PDB header: ribosome	Chain: G: PDB Molecule: 60s ribosomal protein l7a;	PDBTitle: structure of the d. melanogaster 60s ribosomal proteins

Links to external resources
Added to library: Sat May 4 09:06:37 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K V V N Q L F E K R P K N F G I G Q N V Q P K R D L S R F V R W P K Y I R V Q R Q K A V L Q K R L K V P P P I H Q F S Q T L D K T T A V K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T T S S
T T S S S
T S
T T S S S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F K L L E K Y R P E S P L A K K L R L K K I A E A K A K G K D V E P K K K P S Y V S A G T N T V T K L I E Q K K A Q L V V I A H D V D P L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S G G G
S T
S S S
S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L V L F L P A L C R K M G V P Y C I V K G K A R L G R L V R R K T C T T L A L T T V D N N D K A N F G K V L E A V K T N F N E R H E E I R R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T
S
T S S
S
T T T T T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 .

Sequence H W G G G I L G S K S L A R I S K L E R A K A R E L A Q K Q G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	V	V	N	Q	L	F	E	K	R	P	K	N	F	G	I	G	Q	N	V	Q	P	K	R	D	L	S	R	F	V	R	W	P	K	Y	I	R	V	Q	R	Q	K	A	V	L	Q	K	R	L	K	V	P	P	P	I	H	Q	F	S	Q	T	L	D	K	T	T	A	V	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T									T	T	T	S	S							T	T	S	S	S				T															S				T	T	S	S	S	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	K	L	L	E	K	Y	R	P	E	S	P	L	A	K	K	L	R	L	K	K	I	A	E	A	K	A	K	G	K	D	V	E	P	K	K	K	P	S	Y	V	S	A	G	T	N	T	V	T	K	L	I	E	Q	K	K	A	Q	L	V	V	I	A	H	D	V	D	P	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																															S	S	G	G	G									S											T			S						S	S		S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	V	L	F	L	P	A	L	C	R	K	M	G	V	P	Y	C	I	V	K	G	K	A	R	L	G	R	L	V	R	R	K	T	C	T	T	L	A	L	T	T	V	D	N	N	D	K	A	N	F	G	K	V	L	E	A	V	K	T	N	F	N	E	R	H	E	E	I	R	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S									T							S										T	S	S								S				T	T	T															T	T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Sequence	H	W	G	G	G	I	L	G	S	K	S	L	A	R	I	S	K	L	E	R	A	K	A	R	E	L	A	Q	K	Q	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S