PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3j20E_

Fold library id	PDB Header	Molecule	Title
c3j20E_	PDB header: ribosome	Chain: E: PDB Molecule: 30s ribosomal protein s4e;	PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)

Links to external resources
Added to library: Thu Jan 10 08:02:51 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R K G P K R H L K R L A A P T S W Y I E R K A Y K W A V R P R P G P H N M R T S I P L L Y I V R D Y L G Y A K T A R E A R K I L N E G K F L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
B
S T T S
T T S
T T S S S
B
S
S S
S T T
T T S
S S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V D G R V R K D Y K F P V G I M D V V S I P E T G E H Y R V L P N R I G K L I L H P I S E D E A F I K P L R I R N K R M I K G A R V Q L N F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
T T
T T T T
S S S
T T T T T
S
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence H D G T N H I V S I A E K D N Y F T S Y T V L M K V P E R E I L E V L P F E K G A Y V F V T Q G K N V A R K G R I V E I K R F P M G W P D V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S S S S
S S
S S
T T T T
T T
S S S S T T
S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 .

Sequence V T I E D E E G E L F D T L K E Y A F V V G T D K P K I S L P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T T S S
S
S

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	K	G	P	K	R	H	L	K	R	L	A	A	P	T	S	W	Y	I	E	R	K	A	Y	K	W	A	V	R	P	R	P	G	P	H	N	M	R	T	S	I	P	L	L	Y	I	V	R	D	Y	L	G	Y	A	K	T	A	R	E	A	R	K	I	L	N	E	G	K	F	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S					B		S	T	T	S		T	T	S				T	T	S	S	S		B					S		S	S		S	T	T										T	T	S				S	S												S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	D	G	R	V	R	K	D	Y	K	F	P	V	G	I	M	D	V	V	S	I	P	E	T	G	E	H	Y	R	V	L	P	N	R	I	G	K	L	I	L	H	P	I	S	E	D	E	A	F	I	K	P	L	R	I	R	N	K	R	M	I	K	G	A	R	V	Q	L	N	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T						S	S					T	T						T	T	T	T									S	S	S									T	T	T	T	T							S						T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	H	D	G	T	N	H	I	V	S	I	A	E	K	D	N	Y	F	T	S	Y	T	V	L	M	K	V	P	E	R	E	I	L	E	V	L	P	F	E	K	G	A	Y	V	F	V	T	Q	G	K	N	V	A	R	K	G	R	I	V	E	I	K	R	F	P	M	G	W	P	D	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S							S	S	S	S		S	S		S	S								T	T	T	T										T	T							S	S	S	S	T	T													S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Sequence	V	T	I	E	D	E	E	G	E	L	F	D	T	L	K	E	Y	A	F	V	V	G	T	D	K	P	K	I	S	L	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S								T	T	T						S	S		S			S