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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3izxA_

Fold library idPDB HeaderMoleculeTitle
c3izxA_PDB header: virusChain: A: PDB Molecule: structural protein vp3;PDBTitle: 3.1 angstrom cryoem structure of cytoplasmic polyhedrosis virus


Added to library: Thu Jan 10 00:04:34 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MWHYTSINNDTRVALDPKPNQIRTITKPNTVPQLGTDYLYTFNSQRRSHTLRLLGPFQYFNFSETDRGHP
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Known secondary structure (DSSP)

S

B



TGGGTS

GGGTTGGG
SSS


GGGT

SSSS


STTSS



SSTTTST
 .........80.........90.........100.........110.........120.........130.........140
Sequence LFRLPLKYPSKAIPADELIDNLHSWMRSVHLLHVRSEDNTLRYNWMLGVYARSTNYTTPVGQLVVNAPAI
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Known secondary structure (DSSP) TSSSSTT
SSS


TT









TT



TTTS
STT

GG
 .........150.........160.........170.........180.........190.........200.........210
Sequence LNYSNPQDAFNSVFVALGIDYIDIPITNSNIFDDSSTPYNVRIWHAPTMTEVNHILALMRKSTLVSTHSS
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Known secondary structure (DSSP) G

SSTT

S


SSSS

S

S


STS
SS
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence WHWNVLHTFHYRSESDMIDHFAAKILEDWRQKEKLDKGALVEADRVIQRLIPLSSSTYVQRLAAIGALYP
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Known secondary structure (DSSP)
GGG

SSTT


B

S
S


S

TTT

 .........290.........300.........310.........320.........330.........340.........350
Sequence NEFTENVLDLSRLSTALLQLSDTYYQHANDQLRRLYRRMYNDSRTLYMTQRHQELLLAQITADPNILLYP
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Known secondary structure (DSSP)




S


SSS

SS
SS



T
TT



S
 .........360.........370.........380.........390.........400.........410.........420
Sequence YTYIFTTIPTSMNYISNTGQGRIKHSLTVTGATEHDTVADIVLGQTGEDVITISMVEPMSIAVEDMYGYV
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Known secondary structure (DSSP) S



SS
S









S




S

S














SSSSS





GGGGS

 .........430.........440.........450.........460.........470.........480.........490
Sequence LDTPTRDIWPADEQIEQKGDAVALYDTKTSRALGMFNNTVRIDDLLSPLLSLVYRTYIKGDTMTMTQGSL
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Known secondary structure (DSSP)



S



S
S
TTGGGSTS





SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence DHLTLCAAVDSDITFVGNRMIAPLPEGYIPKPMHRNNSTMKMLSLYVALKKLENFATNSYLMAPDTSIIL
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Known secondary structure (DSSP) BSS



SSTTS




SS



B



SSTTSS



S

SS

 .........570.........580.........590.........600.........610.........620.........630
Sequence LGAEREPAVNILRRFNRNVSNVRIIGMGDRAVEPNIRVRVPFPIDKNISADFIICDINSYEDQSFESMFS
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Known secondary structure (DSSP)
SS
SST
SSS



STT

SSS



SS

TT




S





TT
S
 .........640.........650.........660.........670.........680.........690.........700
Sequence ETISVVTTCASAATRALVKINHPSEYMINSVIERLSQLGGVFYHTALLKTASQNPYSYETYIYITPIAAA
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Known secondary structure (DSSP) SSS

SSSS


SSS
SS



SS
 .........710.........720.........730.........740.........750.........760.........770
Sequence VRFPFYSNSAMINRYMTAVADDEMPIIPSIHTVIKGHSNTYSPGLFCGCVDVQSAPLALSQLKSYCSEAT
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Known secondary structure (DSSP)
S



SSTS





S










SS
TT

SS
TTTTTT
S
 .........780.........790.........800.........810.........820.........830.........840
Sequence TWRVDSDDNLVNIIARIDPARIALEFRTRSNTSAYHEYQRYVPNGLGFKVRKTREFRYMHREVTFIHKLM
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Known secondary structure (DSSP)
SSSS




TTTTS




TTTTTT
S



S
SSB


 .........850.........860.........870.........880.........890.........900.........910
Sequence MYALIREQISLTENMTQVVSIGGRNLADISVVPLNMKYVVIDPATRIETLTQEKKNIEVQSRPFQFDAAN
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Known secondary structure (DSSP) TSSSS

S
STTGGGGSS
SSS
TT



TT






SSS
 .........920.........930.........940.........950.........960.........970.........980
Sequence MDLENNSIYLFIAVIMNEPNGAATPARMQMDKIRNVATAMLTRTNCVAYISFYEAGIITRLDQSTAHKTI
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Known secondary structure (DSSP)
TT

S
S
SSS
TTT



TS
S

BTS


SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence RVEEGRLKVANYVPVDTLVEADVTLMLRDIGITHEIIRPSTPELIDACSNYGIRLGSTGGAVLDVFNHYS
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Known secondary structure (DSSP)

SSSS


SSS




B
T





TTTB


TS
 .......
Sequence PVIKLVR
Predicted secondary structure

SS confidence






Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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