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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | PDB Header | Molecule | Title |
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c3iydA_ | PDB header: transcription/dna | Chain: A: PDB Molecule: dna-directed rna polymerase subunit alpha; | PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex |
Added to library: Wed Jan 9 18:59:44 2013 | |
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Links to external resources | |
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  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
Sequence | Q | G | S | V | T | E | F | L | K | P | R | L | V | D | I | E | Q | V | S | S | T | H | A | K | V | T | L | E | P | L | E | R | G | F | G | H | T | L | G | N | A | L | R | R | I | L | L | S | S | M | P | G | C | A | V | T | E | V | E | I | D | G | V | L | H | E | Y | S | T | K |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | S | ![]() | ![]() | ![]() | S | S | S | S | ![]() | ![]() | ![]() | ![]() | S | B | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | T | T | S | S | S | S | S | ![]() | ![]() | ![]() | ![]() | S | S | S | S | S | S |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Sequence | E | G | V | Q | E | D | I | L | E | I | L | L | N | L | K | G | L | A | V | R | V | Q | G | K | D | E | V | I | L | T | L | N | K | S | G | I | G | P | V | T | A | A | D | I | T | H | D | G | D | V | E | I | V | K | P | Q | H | V | I | C | H | L | T | D | E | N | A | S | I | S |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | T | T | B | S | S | T | T | ![]() | ![]() | ![]() | ![]() | G | G | G | T | ![]() | ![]() | ![]() | S | S | S | ![]() | ![]() | B | ![]() | ![]() | S | S | S | G | G | G | B | T | T | ![]() | ![]() | ![]() | S | T | T | B | S | T | T | ![]() | ![]() |   | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 |
Sequence | M | R | I | K | V | Q | R | G | R | G | Y | V | P | A | S | T | R | I | E | R | P | I | G | R | L | L | V | D | A | C | Y | S | P | V | E | R | I | A | Y | N | V | E | A | A | R | V | E | Q | R | T | D | L | D | K | L | V | I | E | M | E | T | N | G | T | I | D | P | E | E | A |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | ![]() | S | S | ![]() | ![]() | ![]() | ![]() | S | S | S | S | B | S | S | ![]() | ![]() | ![]() | B | S | S | S | B | ![]() | ![]() | ![]() | ![]() | S | S | S | ![]() | ![]() | ![]() | ![]() |   | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 |
Sequence | I | R | R | A | A | T | I | L | A | E | Q | L | E | A | F | V | D | L | R | D | V | R | Q | P | E | V | K | E | E | K | P | E | F | D | P | I | L | L | R | P | V | D | D | L | E | L | T | V | R | S | A | N | C | L | K | A | E | A | I | H | Y | I | G | D | L | V | Q | R | T | E |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | T | T | T | T | T | G | G | G | G | S | B | G | G | G | S | T | T | ![]() | ![]() | ![]() | ![]() | T | G | G | G | T | B | T | ![]() | ![]() | ![]() | ![]() | T | S | T |   | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . |
Sequence | V | E | L | L | K | T | P | N | L | G | K | K | S | L | T | E | I | K | D | V | L | A | S | R | G | L | S | L | G | M | R | L | E | N | W | P | P | A | S | I | A | D | ||||||||||||||||||||||||||||
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | T | T | T | T | T | S | T | T | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | S | S | S | S | S | S |
Download: | PDB structure | FASTA sequence |
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