Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3iydA_

Fold library idPDB HeaderMoleculeTitle
c3iydA_PDB header: transcription/dnaChain: A: PDB Molecule: dna-directed rna polymerase subunit alpha;PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex


Added to library: Wed Jan 9 18:59:44 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTK
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP)


S

S






SSSS

S
B
TTTTTTSSSSS






SS

SSSS

 .........80.........90.........100.........110.........120.........130.........140
Sequence EGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASIS
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) TTBSS
TTGGGT

SS
S


B
SSS


GGGB


TTS
TT




B
STT

 .........150.........160.........170.........180.........190.........200.........210
Sequence MRIKVQRGRGYVPASTRIERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEA
Predicted secondary structure






































SS confidence





































































Known secondary structure (DSSP)




SS





SSS
SB





S
S



B


SS
S

B




SSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence IRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTE
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) TTTTTTT
















GGGGSBGGGS


TTTGGGT

BTTS
T
 .........290.........300.........310.........320..
Sequence VELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIAD
Predicted secondary structure


















SS confidence









































Known secondary structure (DSSP) TTTTTSTT

ST

SS


SS
S
S




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D