PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3ioyB_

Fold library id	PDB Header	Molecule	Title
c3ioyB_	PDB header: oxidoreductase	Chain: B: PDB Molecule: short-chain dehydrogenase/reductase sdr;	PDBTitle: structure of putative short-chain dehydrogenase (saro_0793)2 from novosphingobium aromaticivorans

Links to external resources
Added to library: Sat Aug 28 19:16:10 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence F A G R T A F V T G G A N G V G I G L V R Q L L N Q G C K V A I A D I R Q D S I D K A L A T L E A E S G P E V M G V Q L D V A S R E G F K M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T T S T T T T
S
T
T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A A D E V E A R F G P V S I L C N N A G V N L F Q P I E E S S Y D D W D W L L G V N L H G V V N G V T T F V P R M V E R V K A G E Q K G G H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
T T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V V N T A S M A A F L A A G S P G I Y N T T K F A V R G L S E S L H Y S L L K Y E I G V S V L C P G L V K H E F G M E P D V I G A R V I E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T
S T T G G G T
B
S S B

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270

Sequence M K A N R L H I F S H P D H K E E L R E V F D E I I A E Y Q D Y P K D P G Y D Q R V A F E K F R A D S F A E A R R Q S R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
G G G T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	F	A	G	R	T	A	F	V	T	G	G	A	N	G	V	G	I	G	L	V	R	Q	L	L	N	Q	G	C	K	V	A	I	A	D	I	R	Q	D	S	I	D	K	A	L	A	T	L	E	A	E	S	G	P	E	V	M	G	V	Q	L	D	V	A	S	R	E	G	F	K	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T							T	T	T	S	T											T	T	T								S														T				T	T								T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	A	D	E	V	E	A	R	F	G	P	V	S	I	L	C	N	N	A	G	V	N	L	F	Q	P	I	E	E	S	S	Y	D	D	W	D	W	L	L	G	V	N	L	H	G	V	V	N	G	V	T	T	F	V	P	R	M	V	E	R	V	K	A	G	E	Q	K	G	G	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																											G	G	G														T																				T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	V	N	T	A	S	M	A	A	F	L	A	A	G	S	P	G	I	Y	N	T	T	K	F	A	V	R	G	L	S	E	S	L	H	Y	S	L	L	K	Y	E	I	G	V	S	V	L	C	P	G	L	V	K	H	E	F	G	M	E	P	D	V	I	G	A	R	V	I	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							G	G	G	T				S	T	T																						G	G	G	T											B				S	S	B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Sequence	M	K	A	N	R	L	H	I	F	S	H	P	D	H	K	E	E	L	R	E	V	F	D	E	I	I	A	E	Y	Q	D	Y	P	K	D	P	G	Y	D	Q	R	V	A	F	E	K	F	R	A	D	S	F	A	E	A	R	R	Q	S	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T		S						G	G	G														T								T	T