PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3id5E_

Fold library id	PDB Header	Molecule	Title
c3id5E_	PDB header: transferase/ribosomal protein/rna	Chain: E: PDB Molecule: pre mrna splicing protein;	PDBTitle: crystal structure of sulfolobus solfataricus c/d rnp2 assembled with nop5, fibrillarin, l7ae and a split half c/d3 rna

Links to external resources
Added to library: Sat Aug 28 16:05:02 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V K I Y L I E H V I G A V A Y D E N G N I V D Y I T N P R D L G K I T E E L L N N E K G I P F S A T V E L L K K V N P Q E V V V E N E A E V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S
S
T
T T
S S
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P K L Q A L G Y R V S Y E P Y S K V S R I F R E S L P K V A I D I K F A S N E E D Y Y N F L H E L S L E Y T R R K L R S A A Q K R D L L A I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S S
T T T S
S S S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Q A V R A M D D I D K T I N L F S E R L R E W Y S I H F P E L D K L I E D H E E Y A T I V S R F G D R G F L T I D S L K E L G F N E Q R I N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S T
T
S G G G
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence R I L D A A K K S I G A D I S E D D L S A M R M I A N T I L D L Y N I R R N L N N Y L E G V M K E V A P N V T A L V G P A L G A R L L S I A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence G S L D E L A K M P A S T I Q V L G A E K A L F R R P P K H G I I F Q Y P A I H T S P R W Q R G K I A R A L A A K L A I A A R V D A F S G R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S S
T T T
T T T T T
S
S
G G G G S S S
T T T T T

. . . . . . . . . 360 . . . . . . . . . 370 .

Sequence F I G D Q L N E Q L K K R I D E I K E K F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	K	I	Y	L	I	E	H	V	I	G	A	V	A	Y	D	E	N	G	N	I	V	D	Y	I	T	N	P	R	D	L	G	K	I	T	E	E	L	L	N	N	E	K	G	I	P	F	S	A	T	V	E	L	L	K	K	V	N	P	Q	E	V	V	V	E	N	E	A	E	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T							T	T	S										S															T												T	T			S					S		T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	K	L	Q	A	L	G	Y	R	V	S	Y	E	P	Y	S	K	V	S	R	I	F	R	E	S	L	P	K	V	A	I	D	I	K	F	A	S	N	E	E	D	Y	Y	N	F	L	H	E	L	S	L	E	Y	T	R	R	K	L	R	S	A	A	Q	K	R	D	L	L	A	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	T							S	S										T								T	T	S		S	S																						S		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Q	A	V	R	A	M	D	D	I	D	K	T	I	N	L	F	S	E	R	L	R	E	W	Y	S	I	H	F	P	E	L	D	K	L	I	E	D	H	E	E	Y	A	T	I	V	S	R	F	G	D	R	G	F	L	T	I	D	S	L	K	E	L	G	F	N	E	Q	R	I	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																									T	T	T		S	T																		T		S	G	G	G								T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	R	I	L	D	A	A	K	K	S	I	G	A	D	I	S	E	D	D	L	S	A	M	R	M	I	A	N	T	I	L	D	L	Y	N	I	R	R	N	L	N	N	Y	L	E	G	V	M	K	E	V	A	P	N	V	T	A	L	V	G	P	A	L	G	A	R	L	L	S	I	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T			S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	G	S	L	D	E	L	A	K	M	P	A	S	T	I	Q	V	L	G	A	E	K	A	L	F	R	R	P	P	K	H	G	I	I	F	Q	Y	P	A	I	H	T	S	P	R	W	Q	R	G	K	I	A	R	A	L	A	A	K	L	A	I	A	A	R	V	D	A	F	S	G	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S					S	S							T	T	T		T	T	T	T	T				S		S		G	G	G	G	S					S	S		T	T	T																					T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Sequence	F	I	G	D	Q	L	N	E	Q	L	K	K	R	I	D	E	I	K	E	K	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T