PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3icxB_

Fold library id	PDB Header	Molecule	Title
c3icxB_	PDB header: rna binding protein	Chain: B: PDB Molecule: pre mrna splicing protein;	PDBTitle: crystal structure of sulfolobus solfataricus nop5 (135-380)

Links to external resources
Added to library: Sat Aug 28 20:21:48 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K R D L L A I Q A V R A M D D I D K T I N L F S E R L R E W Y S I H F P E L D K L I E D H E E Y A T I V S R F G D R G F L T I D S L K E L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
T
S G G G
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F N E Q R I N R I L D A A K K S I G A D I S E D D L S A M R M I A N T I L D L Y N I R R N L N N Y L E G V M K E V A P N V T A L V G P A L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A R L L S I A G S L D E L A K M P A S T I Q V L G I I F Q Y P A I H T S P R W Q R G K I A R A L A A K L A I A A R V D A F S G R F I G D Q L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T T S
T T
G G G G S T S
T T

. . . . . . . . . 220 . . . . .

Sequence N E Q L K K R I D E I K E K F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	R	D	L	L	A	I	Q	A	V	R	A	M	D	D	I	D	K	T	I	N	L	F	S	E	R	L	R	E	W	Y	S	I	H	F	P	E	L	D	K	L	I	E	D	H	E	E	Y	A	T	I	V	S	R	F	G	D	R	G	F	L	T	I	D	S	L	K	E	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																	T	T		T	T																		T		S	G	G	G								T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	N	E	Q	R	I	N	R	I	L	D	A	A	K	K	S	I	G	A	D	I	S	E	D	D	L	S	A	M	R	M	I	A	N	T	I	L	D	L	Y	N	I	R	R	N	L	N	N	Y	L	E	G	V	M	K	E	V	A	P	N	V	T	A	L	V	G	P	A	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T																																											S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	R	L	L	S	I	A	G	S	L	D	E	L	A	K	M	P	A	S	T	I	Q	V	L	G	I	I	F	Q	Y	P	A	I	H	T	S	P	R	W	Q	R	G	K	I	A	R	A	L	A	A	K	L	A	I	A	A	R	V	D	A	F	S	G	R	F	I	G	D	Q	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S					T	T	S						T	T			G	G	G	G	S					T	S																									T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Sequence	N	E	Q	L	K	K	R	I	D	E	I	K	E	K	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T