PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3i6vA_

Fold library id	PDB Header	Molecule	Title
c3i6vA_	PDB header: transport protein	Chain: A: PDB Molecule: periplasmic his/glu/gln/arg/opine family-binding	PDBTitle: crystal structure of a periplasmic his/glu/gln/arg/opine2 family-binding protein from silicibacter pomeroyi in3 complex with lysine

Links to external resources
Added to library: Sat Aug 28 17:41:18 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T V R M G T E G A Y P P Y N F I N D A G E V D G F E R E L G D E L C K R A G L T C E W V K N D W D S I I P N L V S G N Y D T I I A G M S I T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T
T T S
S T
G G G T T S
S
S S
B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D E R D E V I D F T Q N Y I P P T A S S Y V A T S D G A D L S G I V A A Q T A T I Q A G Y I A E S G A T L V E F A T P E E T I A A V R N G E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S S T T
T T S T T S S S S S S T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A D A V F A D R D Y L V P I V A E S G G E L M F V G D D V P L G G G V G M G L R E S D G E L R G K F D A A I T S M K E D G T L N T M I K K W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T T T S S
S S
T T
T S

. . . . . . . . .

Sequence F G E D A A V Y K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	V	R	M	G	T	E	G	A	Y	P	P	Y	N	F	I	N	D	A	G	E	V	D	G	F	E	R	E	L	G	D	E	L	C	K	R	A	G	L	T	C	E	W	V	K	N	D	W	D	S	I	I	P	N	L	V	S	G	N	Y	D	T	I	I	A	G	M	S	I	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S			T	T	T					T	T	S				S														T										G	G	G							T	T	S		S				S	S		B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	E	R	D	E	V	I	D	F	T	Q	N	Y	I	P	P	T	A	S	S	Y	V	A	T	S	D	G	A	D	L	S	G	I	V	A	A	Q	T	A	T	I	Q	A	G	Y	I	A	E	S	G	A	T	L	V	E	F	A	T	P	E	E	T	I	A	A	V	R	N	G	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	S																	S	S	T	T			T	T	S						T	T	S									S	S	S						S	S										T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	D	A	V	F	A	D	R	D	Y	L	V	P	I	V	A	E	S	G	G	E	L	M	F	V	G	D	D	V	P	L	G	G	G	V	G	M	G	L	R	E	S	D	G	E	L	R	G	K	F	D	A	A	I	T	S	M	K	E	D	G	T	L	N	T	M	I	K	K	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S																T	T	T	S	S										S	S								T	T																		T	S
	.	.	.	.	.	.	.	.	.
Sequence	F	G	E	D	A	A	V	Y	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S