PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3i1jB_

Fold library id	PDB Header	Molecule	Title
c3i1jB_	PDB header: oxidoreductase	Chain: B: PDB Molecule: oxidoreductase, short chain	PDBTitle: structure of a putative short chain dehydrogenase from2 pseudomonas syringae

Links to external resources
Added to library: Sat Aug 28 18:50:10 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X F D Y S A H P E L L K G R V I L V T G A A R G I G A A A A R A Y A A H G A S V V L L G R T E A S L A E V S D Q I K S A G Q P Q P L I I A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T T
S
S S T T
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N L E N A T A Q Q Y R E L A A R V E H E F G R L D G L L H N A S I I G P R T P L E Q L P D E D F X Q V X H V N V N A T F X L T R A L L P L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
S
S
G G G S
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K R S E D A S I A F T S S S V G R K G R A N W G A Y G V S K F A T E G L X Q T L A D E L E G V T A V R A N S I N P G A T R T G X R A A Y N P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
G G G T S
T T
T T T S S
S
S S T T T
G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . .

Sequence L N N P A P E D I X P V Y L Y L X G P D S T G I N G Q A L N A Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G S
G G G G S G G G T T
S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	F	D	Y	S	A	H	P	E	L	L	K	G	R	V	I	L	V	T	G	A	A	R	G	I	G	A	A	A	A	R	A	Y	A	A	H	G	A	S	V	V	L	L	G	R	T	E	A	S	L	A	E	V	S	D	Q	I	K	S	A	G	Q	P	Q	P	L	I	I	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	T	T	T	T							S		S	S													T	T								S															T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	L	E	N	A	T	A	Q	Q	Y	R	E	L	A	A	R	V	E	H	E	F	G	R	L	D	G	L	L	H	N	A	S	I	I	G	P	R	T	P	L	E	Q	L	P	D	E	D	F	X	Q	V	X	H	V	N	V	N	A	T	F	X	L	T	R	A	L	L	P	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	T																		S																S		G	G	G	S													T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	R	S	E	D	A	S	I	A	F	T	S	S	S	V	G	R	K	G	R	A	N	W	G	A	Y	G	V	S	K	F	A	T	E	G	L	X	Q	T	L	A	D	E	L	E	G	V	T	A	V	R	A	N	S	I	N	P	G	A	T	R	T	G	X	R	A	A	Y	N	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	S									G	G	G	T	S			T	T																							T	T	T	S	S										S		S	S	T	T	T					G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Sequence	L	N	N	P	A	P	E	D	I	X	P	V	Y	L	Y	L	X	G	P	D	S	T	G	I	N	G	Q	A	L	N	A	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	S			G	G	G	G									S	G	G	G	T	T			S