PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3hqvB_

Fold library id	PDB Header	Molecule	Title
c3hqvB_	PDB header: structural protein, contractile protein	Chain: B: PDB Molecule: collagen alpha-2(i) chain;	PDBTitle: low resolution, molecular envelope structure of type i2 collagen in situ determined by fiber diffraction. single3 type i collagen molecule, rigid body refinement

Links to external resources
Added to library: Thu Jan 10 04:17:42 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S D K G V S A G P G P M G L M G P R G P G A V G A G P Q G F Q G P A G E G E G Q T G P A G S R G P A G P G K A G E D G H G K P G R G E R G V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V G P Q G A R G F G T G L G F G I R G H N G L D G L K G Q G A Q G V G E G A G E N G T G Q A G A R G L G E R G R V G A G P A G A R G S D G S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V G P V G P A G P I G S A G P G F G A G P G E L G P V G N G P A G P A G P R G E A G L G L S G P V G P G N P G A N G L T G A G A T G L G V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence G A G L G P R G I G P V G A A G A T G P R G L V G E G P A G S G E T G N K G E G S A G A Q G P G P S G E E G K R G S P G E P G S A G P A G P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence G L R G S G S R G L G A D G R A G V M G P P G N R G S T G P A G V R G P N G D A G R G E G L M G P R G L G S G N V G P A G K E G P V G L G I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S T T B B T T T B B T T B T T B S T T T T B T T
T T T T T S B T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence D G R G P I G P A G P R G E A G N I G F G P K G P S G D G K G E K G H P G L A G A R G A G P D G N N G A Q G P G P Q G V Q G G K G E Q G P A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S B T T T T T T S S S
B
T T
S B S
S S S B S S S
G G G T S
S S S T T S S S B

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence G P G F Q G L G P S G T A G E V G K G E R G L P G E F G L G P A G P R G E R G P G E S G A A G P S G P I G I R G P S G A G P D G N K G E A G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T B
B S
B S S S S S S S S B T T B
S S B
B B T B T
S S
B
B B B T T T B T S B S B S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence A V G A P G S A G A S G P G G L G E R G A A G I G G K G E K G E T G L R G E I G N P G R D G A R G A G A I G A G P A G A S G D R G E A G A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S B S S S B B B S B S
S S
S S T B T T S B B T S T T B S B S
S S S S S B S
B B S B T T T B
B B
S S S S S B B B B T T B

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence G P S G P A G P R G S P G E R G E V G P A G P N G F A G P A G S A G Q G A G E K G T K G P K G E N G I V G P T G P V G A A G P S G P N G P P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T S B T S B B B
S B T T S
S B
B T T S S S T T T T S
S
S
B T
S B T T B T
S B S B S S S B S S B

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence G P A G S R G D G G P P G M T G F G A A G R T G P G P S G I T G P G P G A A G K E G I R G P R G D Q G P V G R T G E I G A S G P P G F A G E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S B B B S S S S S B S S
B
B
S S S
S S S
S S S T T S S S S B S S
B B S T T

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence K G P S G E G T T G P G T A G P Q G L L G A G I L G L G S R G E R G Q G I A G A L G E G P L G I A G P G A R G P G A V G S G V N G A G E A G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B S T T T T
B
T T S T T B B B T B
T T S S S T T S
B S B S S
T T
B B
B S

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence R D G N G S D G P G R D G Q G H K G E R G Y G N I G P T G A A G A P G P H G S V G P A G K H G N R G E P G P A G S V G P V G A V G P R G P S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
B B S S
S
S
S S S S S S
S S B S B B B T T B S
S S S S S S S B T T T T B S S S S B B S S S S T T T

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence G P Q G I R G D K G E P G D G A R G L P G L K G H N G L Q G L P G L A G L H G D Q G A P G P V G P A G P R G P A G P S G P I G K D G R S G H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T S
B
B S S
B
T T
S
S S S S S B S
S S S S S S S S S S S
S B
S S S B S S S S S S S S S S S B S S S S S S

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . .

Sequence P G P V G P A G V R G S Q G S Q G P A G P G P G P G P P G V S G G G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S S S
S
S S S S S S
S
S S T T T S T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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