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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3ho1A_

Fold library idPDB HeaderMoleculeTitle
c3ho1A_PDB header: nucleic acid binding protein/dna/rnaChain: A: PDB Molecule: argonaute;PDBTitle: crystal structure of t. thermophilus argonaute n546 mutant protein2 complexed with dna guide strand and 12-nt rna target strand


Added to library: Thu Jan 10 04:42:46 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NHLGKTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYPLLAQVARRAGGVTVRMGDGLASWSPPE
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Known secondary structure (DSSP)






TTTSS
S


TTTT
SSTTSS
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence VLVLEGTLARMGQTYAYRLYPKGRRPLDPKDPGERSVLSALARRLLQERLRRLEGVWVEGLAVYRREHAR
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Known secondary structure (DSSP) TS


SS




TTST
SSSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence GPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRILCEMSLEAWLAQGHPLPKRVRNAYDRRTWELLRLGEED
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Known secondary structure (DSSP) TT
SSS
S
S



SSSS







 .........220.........230.........240.........250.........260.........270.........280
Sequence PKELSLLDYHASKGRLQGREGGRVAWVADPKKPIPHLTGLLVPVLTLEDLHEEEGSLALSLPWEERRRRT
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Known secondary structure (DSSP) TT


STTTTTTTSTTTTS


S
S



TTS

TTTTSS
SS






 .........290.........300.........310.........320.........330.........340.........350
Sequence REIASWIGRRLGLGTPEAVRAQAYRLSIPKLMGRRAVSKPADALRVGFYRAQETALALLRLDGAQGWPEF
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Known secondary structure (DSSP) TT
S







SSSB
SSGGG

SS



SS

S

 .........360.........370.........380.........390.........400.........410.........420
Sequence LRRALLRAFGASGASLRLHTLHAHPSQGLAFREALRKAKEEGVQAVLVLTPPMAWEDRNRLKALLLREGL
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Known secondary structure (DSSP) SSSS




GGGTTT

S


TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence PSQILNVPLREEERHRWENALLGLLAKAGLQVVALSGAYPAELAVGFDAGGRESFRFGGAACAVGGGHLL
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Known secondary structure (DSSP)
SS

TT
T




S

S
STT




 .........500.........510.........520.........530.........540.........550.........560
Sequence WTLPEAQAGERIPQEVVWDLLEETLWAFRRKAGRLPSRVLLLRNGRVPQDEFALALEALAREGIAYDLVS
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Known secondary structure (DSSP)





S


SS

S
SSS
SGGGTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence VRKSGGGRVYPVQGRLADGLYVPLEDKTFLLLTVHRDFRGTPRPLKLVHEAGDTPLEALAHQIFHLTRLY
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Known secondary structure (DSSP) SS



SSS


SS
STT




SSS




S
GGG

 .........640.........650.........660.........670...
Sequence PASGFAFPRLPAPLHLADRLVKEVGRLGIRHLKEVDREKLFFV
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Known secondary structure (DSSP) SS
SSS

SS
TT
S


SS
TT

TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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