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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3hmjB_

Fold library idPDB HeaderMoleculeTitle
c3hmjB_PDB header: transferaseChain: B: PDB Molecule: fatty acid synthase subunit alpha;PDBTitle: saccharomyces cerevisiae fas type i


Added to library: Wed Jan 9 17:39:52 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MKPEVEQELAHILLTELLAYQFASPVRWIETQDVFLKDFNTERVVEIGPSPTLAGMAQRTLKNKYESYDA
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Known secondary structure (DSSP)

TTTS


TS

S
SSSSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence ALSLHREILCYSKDAKEIYYTPDPIADEPVKASLLLHVLVAHKLKKSLDSIPMSKTIKDLVGGKSTVQNE
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Known secondary structure (DSSP) TT


TTT
TT










TTTS
TTT

TTS
TT
T
 .........150.........160.........170.........180.........190.........200.........210
Sequence ILGDLGKEFGTTPEKPEETPLEELAETFQDTFSGALGKQSSSLLSRLISSKMPGGFTITVARKYLQTRWG
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Known secondary structure (DSSP)



S
TTTS

SS


S
TT

TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence LPSGRQDGVLLVALSNEPAARLGSEADAKAFLDSMAQKYASIVGVDLLEEITKDHKVLARQQLQVLARYL
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Known secondary structure (DSSP)

TTTT

SS


ST



 .........290.........300.........310.........320.........330.........340.........350
Sequence KMDLDNGERKFLKEKDTVAELQAQLDYLNAELGEFFVNGVATSFSRKKARTFDSSWNWAKQSLLSLYFEI
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Known secondary structure (DSSP) T

TT
TS



GGG


 .........360.........370.........380.........390.........400.........410.........420
Sequence IHGVLKNVDREVVSEAINIMNRSNDALIKFMEYHISNTDETKGENYQLVKTLGEQLIENCKQVLDVDPVY
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Known secondary structure (DSSP) TTSS
TT
TT

TS
GGG
TTS


B
 .........430.........440.........450.........460.........470.........480.........490
Sequence KDVAKPTGPKTAIDKNGNITYSEEPREKVRKLSQYVQEMALGGPITKESQMDVEDALDKDSTKEVASLPN
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Known secondary structure (DSSP)


S


TTS

TT

S

TT

S







TTT
TTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence KSTISKTVSSTIPRETIPFLHLRKKTPAGDWKYDRQLSSLFLDGLEKAAFNGVTFKDKYVLITGAGKGSI
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Known secondary structure (DSSP)



SS
GGGGS
TT


SS
TTS

T
B

TT
S

SSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence GAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFIYDTEKN
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Known secondary structure (DSSP) TT
SS



TT


TT
S
GGG
 .........640.........650.........660.........670.........680.........690.........700
Sequence GGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSP
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Known secondary structure (DSSP) TS




S






SB
GGG

TTTT

S


S
 .........710.........720.........730.........740.........750.........760.........770
Sequence NHGTFGGDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTNNIIAEGIEKMGVRTFSQKEMAF
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Known secondary structure (DSSP)
TT
SS
BTTGGGSS
TTT





TTTTT
B
 .........780.........790.........800.........810.........820.........830.........840
Sequence NLLGLLTPEVVELCQKSPVMADLNGGLQFVPELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSA
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Known secondary structure (DSSP) TTSSS
SBSGGGSSST
TTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence DAAYAQVEIQPRANIQLDFPELKPYKQVKQIAPAELEGLLDLERVIVVTGFAEVGPWGSARTRWEMEAFG
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Known secondary structure (DSSP) TTTSS


















S
GGGTTTS
GGG
BTTBSS
 .........920.........930.........940.........950.........960.........970.........980
Sequence EFSLEGCVEMAWIMGFISYHNGNLKGRPYTGWVDSKTKEPVDDKDVKAKYETSILEHSGIRLIEPELFNG
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Known secondary structure (DSSP) S

TTSTTTTT

B

TS

GGGGTT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence YNPEKKEMIQEVIVEEDLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDR
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Known secondary structure (DSSP)

TTS
SS




GGG
TTTS

TT


S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence LVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGG
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Known secondary structure (DSSP)


TT

TTTTT

S
TTT
SSGGGS
GGG

SS

 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence VSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGK
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Known secondary structure (DSSP) TTTTTT



TTSSTTT


S






TT
TTS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence ARICIVGGYDDFQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLA
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Known secondary structure (DSSP)
S


TT
B

TT

GGGS

TTBTT

SB
BB
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence LKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWV
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Known secondary structure (DSSP) T






S
S
TT


SGGGGGG



S

SS

GGG
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence ENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTI
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Known secondary structure (DSSP) TTS

S

TTSTTTT
SSS
TTT

G
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence DDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSG
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Known secondary structure (DSSP) GG



S
T

TT


T
B
GGGTT
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence IIPGNRNADNVDKILEQFEYVLYPSKTLKTDGVRAVSITSFGFGQKGGQAIVVHPDYLYGAITEDRYNEY
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Known secondary structure (DSSP)


TT
SSB
GGGGG
TT

SS

S


TTT
TTTS
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence VAKVSAREKSAYKFFHNGMIYNKLFVSKEHAPYTDELEEDVYLDPLARVSKDKKSGSLTFNSKNIQSKDS
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Known secondary structure (DSSP) TS
SS



S
SS
GGG
TT


SSS
S
TTTTT
STT
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence YINTIETAKMIENMTKEKVSNGVGVDVELITSINVENDTFIERNFTPQEIEYCSAQPSVQSSFAGTWSAK
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Known secondary structure (DSSP) T

TTTSSSSTTTTTTSS



GGG

TT
S
TSSS
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence EAVFKSLGVKSLGGGAALKDIEIVRVNKNAPAVELHGNAKKAAEEAGVTDVKVSISHDDLQAVAVAVSTK
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Known secondary structure (DSSP)

S

SS
S

TT

TTS


TT


SS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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