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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3fhdA_

Fold library idPDB HeaderMoleculeTitle
c3fhdA_PDB header: hydrolaseChain: A: PDB Molecule: orf 37;PDBTitle: crystal structure of the shutoff and exonuclease protein2 from kaposis sarcoma associated herpesvirus


Added to library: Sun Aug 29 04:04:54 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PADLFSEDYLVDTLDGLTVDDQQAVLASLSFSKFLKHAKVRDWCAQAKIQPSMPALRMAYNYFLFSKVGE
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Known secondary structure (DSSP)


TT

S
TTS
TTSSTSTT


BTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence FIGSEDVCNFFVDRVFGGVRLLDVASVYAACSQMNAHQRHHICCLVERATSSQSLNPVWDALRDGIISSS
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Known secondary structure (DSSP) T
TTSTT



ST

TTTGGGSTTTTSGG
 .........150.........160.........170.........180.........190.........200.........210
Sequence KFHWAVKQQNTSKKIFSPGLRCEEVVKTLLATLLHPDETNCLDYGFMQSPQNGIFGVSLDFAANVKTDTE
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Known secondary structure (DSSP) GT
STTS
S

-
T
TTS






TTTSS

S
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence GRLQFDPNCKVYEIKCRFKYTFAKMECDPIYAAYQRLYEAPGKLALKDFFYSISKPAVEYVGLGKLPSES
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Known secondary structure (DSSP) S

GGG
B
S
TT
S
STTSSS
S

TTB


SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence DYLVAYDQEWEACRKLTPLHNLIRECILHNSTTESDVYVLTDPQDTRGQISIKARFKANLFVNVRHSYFY
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Known secondary structure (DSSP)
S
SGGG



B

GGGTSSSS


TTB




TTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence QVLLQSSIVEEYIGLDSGIPRLGSPKYYIATGFFRKRGYQDPVNCTIGGDALDPHVEIPTLLIVTPVYFP
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Known secondary structure (DSSP) SSS


S





TTS
S

TT

TTS



 .........430.........440.........450......
Sequence RGAKHRLLHQAANFWSRSAKDTFPYIKWDFSYLSAN
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Known secondary structure (DSSP) STTS

B


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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