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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3fd4B_

Fold library idPDB HeaderMoleculeTitle
c3fd4B_PDB header: viral proteinChain: B: PDB Molecule: glycoprotein gp42;PDBTitle: crystal structure of epstein-barr virus gp42 protein


Added to library: Sun Aug 29 03:24:31 2010
 
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 1........10.........20.........30.........40.........50.........60.........70
Sequence VKLPHWTPTLHTFQVPQNYTKANCTYCNTREYTFSYKGCCFYFTKKKHTWNGCFQACAELYPCTYFYGPT
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Known secondary structure (DSSP)



S




TT










S



TTT
STT
SS
B
TTSTT



 .........80.........90.........100.........110.........120.........130.........140
Sequence PDILPVVTRNLNAIESLWVGVYRVGEGNWTSLDGGTFKVYQIFGSHCTYVSKFSTVPVSHHECSFLKPCL
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Known secondary structure (DSSP) TTTTTS
TT



SSS

TT


B

B
SSS
S
SS
SS

S
TTS
B
B
 .......
Sequence CVSQRSN
Predicted secondary structure


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Known secondary structure (DSSP)



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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