PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3fd2A_

Fold library id	PDB Header	Molecule	Title
c3fd2A_	PDB header: hydrolase/dna	Chain: A: PDB Molecule: dna endonuclease i-msoi, linker, dna endonuclease	PDBTitle: crystal structure of mmsoi/dna complex with calcium

Links to external resources
Added to library: Sat Aug 28 21:58:12 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N T L Q P T E A A Y I A G F L D G D G S I Y A K L I P R P D Y K D I K Y Q V S L A I S F I Q R K D K F P Y L Q D I Y D Q L G K R G N L R K D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S S
G G G T T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R G D G I A D Y T I I G S T H L S I I L P D L V P Y L R I K K K Q A N R I L H I I N L Y P Q A Q K N P S K F L D L V K I V D D V Q N L N K R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S T T T
T T T T
T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A D E L K S T N Y D R L L E E F L K A G K I E S S P T G S G S G S K K N T L Q P T E A A Y I A G F L D G D G S I Y A K L I P R P D Y K D I K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
T T S
S S
S
S S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence Y Q V S L A I S F I Q R K D K F P Y L Q D I Y D Q L G K R G N L R K D R G D G I A D Y T I I G S T H L S I I L P D L V P Y L R I K K K Q A N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T T S
S S
S S S S S T T T
T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . .

Sequence R I L H I I N L Y P Q A Q K N P S K F L D L V K I V D D V Q N L N K R A D E L K S T N Y D R L L E E F L K A G K I E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S T T T T T
T S
T T S
T T S

Download: PDB structure FASTA sequence
Hidden Markov model

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	T	L	Q	P	T	E	A	A	Y	I	A	G	F	L	D	G	D	G	S	I	Y	A	K	L	I	P	R	P	D	Y	K	D	I	K	Y	Q	V	S	L	A	I	S	F	I	Q	R	K	D	K	F	P	Y	L	Q	D	I	Y	D	Q	L	G	K	R	G	N	L	R	K	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																													T	T		S	S	S														G	G	G											T	T	T		S				S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	G	D	G	I	A	D	Y	T	I	I	G	S	T	H	L	S	I	I	L	P	D	L	V	P	Y	L	R	I	K	K	K	Q	A	N	R	I	L	H	I	I	N	L	Y	P	Q	A	Q	K	N	P	S	K	F	L	D	L	V	K	I	V	D	D	V	Q	N	L	N	K	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	S								S												T	T	T			T	T																		T	T																			T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	D	E	L	K	S	T	N	Y	D	R	L	L	E	E	F	L	K	A	G	K	I	E	S	S	P	T	G	S	G	S	G	S	K	K	N	T	L	Q	P	T	E	A	A	Y	I	A	G	F	L	D	G	D	G	S	I	Y	A	K	L	I	P	R	P	D	Y	K	D	I	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S																T	T	S			S	S					S																																		S	S		S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	Y	Q	V	S	L	A	I	S	F	I	Q	R	K	D	K	F	P	Y	L	Q	D	I	Y	D	Q	L	G	K	R	G	N	L	R	K	D	R	G	D	G	I	A	D	Y	T	I	I	G	S	T	H	L	S	I	I	L	P	D	L	V	P	Y	L	R	I	K	K	K	Q	A	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													G	G	G											T	T	S		S				S		S	S	S	S								S												T	T	T			T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Sequence	R	I	L	H	I	I	N	L	Y	P	Q	A	Q	K	N	P	S	K	F	L	D	L	V	K	I	V	D	D	V	Q	N	L	N	K	R	A	D	E	L	K	S	T	N	Y	D	R	L	L	E	E	F	L	K	A	G	K	I	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	S	T	T	T	T	T																			T	S		T	T	S																T	T	S