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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3f3gD_

Fold library idPDB HeaderMoleculeTitle
c3f3gD_PDB header: structural proteinChain: D: PDB Molecule: nucleoporin nup85;PDBTitle: crystal structure of the nucleoporin pair nup85-seh1, space group2 p212121


Added to library: Thu Jan 10 04:53:04 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KRDPVSGAILVPMTVNDQPIEKNGDKMPLKFKLGPLSYQNMAFITAKDKYKLYPVRIPRLDTSKEFSAYV
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Known secondary structure (DSSP)



SSSS



S
SS




STT



TT
STT



B



SS



TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence SGLFEIYRDLGDDRVFNVFAKEHNATVNLAMEAILNELEVFIGRVKDQDGRVNRFYELEESLTVLNCLRT
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Known secondary structure (DSSP) STTTTS




SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence MYFILDGQDVEENRSEFIESLLNWINRSDGEPDEEYIEQVFSGKKVFETQYFWKLLNQLVLRGLLSQAIG
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Known secondary structure (DSSP) SS
SSS
TTTTSS


S
GGGG



GGGSTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence CIERSDLLPYLSDTCAVSFDAVSDSIELLKQYPKDSSSTFREWKNLVLKLSQAFGSSATDISGELRDYIE
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Known secondary structure (DSSP) TTTTTTTGGGGT
TT

SS
TS


S
 .........290.........300.........310.........320.........330.........340.........350
Sequence DFLLVIGGNQRKILQYSRTWYESFCGFLLYYIPSLELSAEYLQMSLEANVVDITNDWEQPCVDIISGKIH
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Known secondary structure (DSSP) TT
T
SST


TTTTTS


SSSTTS

T
 .........360.........370.........380.........390.........400.........410.........420
Sequence SILPVMESLDSCTAAFTAMICEAKGLIEDLFSYRNGMASYMLNSFAFELCSLGDKELWPVAIGLIALSAT
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Known secondary structure (DSSP) TTTT
TT



SSSSSS
TTTT
TTS
SS
 .........430.........440.........450.........460.........470.........480
Sequence GTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNIIE
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Known secondary structure (DSSP) S
GGG



STT
T



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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