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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3dyuB_

Fold library idPDB HeaderMoleculeTitle
c3dyuB_PDB header: transport proteinChain: B: PDB Molecule: sorting nexin-9;PDBTitle: crystal structure of snx9px-bar (230-595), h32


Added to library: Tue Mar 16 13:33:03 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EKIPIIVGDYGPMWVYPTSTFDCVVADPRKGSKMYGLKSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLV
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Known secondary structure (DSSP)



SS




SS





SSSS


SSS


 .........80.........90.........100.........110.........120.........130.........140
Sequence KFGSAIPIPSLPDKQVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKA
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Known secondary structure (DSSP) TTTS








SS
TTST
TTTTTSS

STT
 .........150.........160.........170.........180.........190.........200.........210
Sequence ERDELAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIG
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Known secondary structure (DSSP) T



GGGGGGGSS



TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence KALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGT
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Known secondary structure (DSSP) TTS

SS
STSGGGTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence HKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYE
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Known secondary structure (DSSP) TTTTSS
 .........360......
Sequence TIAEKLRQALSRFPVM
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Known secondary structure (DSSP) TTS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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