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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3dmkA_

Fold library idPDB HeaderMoleculeTitle
c3dmkA_PDB header: cell adhesionChain: A: PDB Molecule: down syndrome cell adhesion molecule (dscam) isoformPDBTitle: crystal structure of down syndrome cell adhesion molecule (dscam)2 isoform 1.30.30, n-terminal eight ig domains


Added to library: Thu Jan 10 04:58:52 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAED
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Known secondary structure (DSSP)



STTT

S

TTS
B


BTTTB
STT



GGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence YRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSW
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Known secondary structure (DSSP)

TT






B


TTS


B

TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence HTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSA
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Known secondary structure (DSSP) TTS

BSS
BTTT
TTS
SS

GGGSS
TTT


SB



S

 .........220.........230.........240.........250.........260.........270.........280
Sequence VPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVV
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Known secondary structure (DSSP)

B

GGGG
TTS




B
SS


TTSS



SSSTT
S

G
 .........290.........300.........310.........320.........330.........340.........350
Sequence EDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG
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Known secondary structure (DSSP) GG

SS

SS

TTS



TT
S
 .........360.........370.........380.........390.........400.........410.........420
Sequence HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGG
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Known secondary structure (DSSP)

SSSS

GGG

SS





SS






SSS

 .........430.........440.........450.........460.........470.........480.........490
Sequence NPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY
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Known secondary structure (DSSP) SS

TT

S
TT
TTS
SS

TTT
TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence GLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATY
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Known secondary structure (DSSP) SS





TT




SSTTS

STT
TTSSS


 .........570.........580.........590.........600.........610.........620.........630
Sequence TCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDL
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Known secondary structure (DSSP) SSS





B




SS
SS
B


SSS

TTB


GGG
 .........640.........650.........660.........670.........680.........690.........700
Sequence GITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVE
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Known secondary structure (DSSP) T
TTTS

GGG

SS





TT

 .........710.........720.........730.........740.........750.........760.........770
Sequence CKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM
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Known secondary structure (DSSP)
S




SSSTT

B



BTTTT
S

GGG

SSSS
 .....
Sequence ISVQA
Predicted secondary structure
SS confidence




Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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