PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3deeA_

Fold library id	PDB Header	Molecule	Title
c3deeA_	PDB header: transcription	Chain: A: PDB Molecule: putative regulatory protein;	PDBTitle: crystal structure of a putative regulatory protein involved in2 transcription (ngo1945) from neisseria gonorrhoeae fa 1090 at 2.25 a3 resolution

Links to external resources
Added to library: Tue Mar 16 12:16:54 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L N V Y I R L I R N N I H S F I D R C Y T E T R Q Y F D S K E W S R L K E G F V R D A R A Q T P Y F Q E I P G E F L Q Y C Q S L P L S D G I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T G G G G S
S G G G G
S
G G G T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L A L X D F E Y T Q L L A E V A Q I P D I P D I H Y S N D S K Y T P S P A A F I R Q Y R Y D V T H D L Q E A E T A L L I W R N A E D D V X Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S
T T
T T T T
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200

Sequence Q T L D G F D X X L L E I X G S S A L S F D T L A Q T L V E F X P K A D N W K N I L L G K W S G W I E Q R I I I P S L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
B
G G G S
S S T T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	N	V	Y	I	R	L	I	R	N	N	I	H	S	F	I	D	R	C	Y	T	E	T	R	Q	Y	F	D	S	K	E	W	S	R	L	K	E	G	F	V	R	D	A	R	A	Q	T	P	Y	F	Q	E	I	P	G	E	F	L	Q	Y	C	Q	S	L	P	L	S	D	G	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T	T	T	G	G	G	G	S															S	G	G	G	G		S		G	G	G												T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	A	L	X	D	F	E	Y	T	Q	L	L	A	E	V	A	Q	I	P	D	I	P	D	I	H	Y	S	N	D	S	K	Y	T	P	S	P	A	A	F	I	R	Q	Y	R	Y	D	V	T	H	D	L	Q	E	A	E	T	A	L	L	I	W	R	N	A	E	D	D	V	X	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																								S				T	T	S						T	T										T	T	T	T														T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Sequence	Q	T	L	D	G	F	D	X	X	L	L	E	I	X	G	S	S	A	L	S	F	D	T	L	A	Q	T	L	V	E	F	X	P	K	A	D	N	W	K	N	I	L	L	G	K	W	S	G	W	I	E	Q	R	I	I	I	P	S	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	S		B										G	G	G	S		S	S	T																T	T	S