PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3ddlB_

Fold library id	PDB Header	Molecule	Title
c3ddlB_	PDB header: transport protein	Chain: B: PDB Molecule: xanthorhodopsin;	PDBTitle: crystallographic structure of xanthorhodopsin, a light-2 driven ion pump with dual chromophore

Links to external resources
Added to library: Tue Mar 16 12:38:12 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L P T L T P G Q Y S L V F N M F S F T V A T M T A S F V F F V L A R N N V A P K Y R I S M M V S A L V V F I A G Y H Y F R I T S S W E A A Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
G G G S
G G G T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A L Q N G M Y Q P T G E L F N D A Y R Y V D W L L T V P L L T V E L V L V M G L P K N E R G P L A A K L G F L A A L M I V L G Y P G E V S E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S
S
T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N A A L F G T R G L W G F L S T I P F V W I L Y I L F T Q L G D T I Q R Q S S R V S T L L G N A R L L L L A T W G F Y P I A Y M I P M A N T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S T T T T S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250

Sequence P G T I V A L Q V G Y T I A D V L A K A G Y G V L I Y N I A K A K S E E E G F N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	P	T	L	T	P	G	Q	Y	S	L	V	F	N	M	F	S	F	T	V	A	T	M	T	A	S	F	V	F	F	V	L	A	R	N	N	V	A	P	K	Y	R	I	S	M	M	V	S	A	L	V	V	F	I	A	G	Y	H	Y	F	R	I	T	S	S	W	E	A	A	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				B																														G	G	G	S		G	G	G																												T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	L	Q	N	G	M	Y	Q	P	T	G	E	L	F	N	D	A	Y	R	Y	V	D	W	L	L	T	V	P	L	L	T	V	E	L	V	L	V	M	G	L	P	K	N	E	R	G	P	L	A	A	K	L	G	F	L	A	A	L	M	I	V	L	G	Y	P	G	E	V	S	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S	S					S																											S																														T		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	A	A	L	F	G	T	R	G	L	W	G	F	L	S	T	I	P	F	V	W	I	L	Y	I	L	F	T	Q	L	G	D	T	I	Q	R	Q	S	S	R	V	S	T	L	L	G	N	A	R	L	L	L	L	A	T	W	G	F	Y	P	I	A	Y	M	I	P	M	A	N	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S	S																						T	T	T						T	S																												T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Sequence	P	G	T	I	V	A	L	Q	V	G	Y	T	I	A	D	V	L	A	K	A	G	Y	G	V	L	I	Y	N	I	A	K	A	K	S	E	E	E	G	F	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																					T	T