PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3dd4A_

Fold library id	PDB Header	Molecule	Title
c3dd4A_	PDB header: transport protein	Chain: A: PDB Molecule: kv channel-interacting protein 4;	PDBTitle: structural basis of kchip4a modulation of kv4.3 slow inactivation

Links to external resources
Added to library: Thu Jan 10 01:22:24 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M N L E G L E M I A V L I V I V L F V K L L E Q F G L I E D S V E D E L E M A T V R H R P E A L E L L E A Q S K F T K K E L Q I L Y R G F K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T S
S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N E C P S G V V N E E T F K E I Y S Q F F P Q G D S T T Y A H F L F N A F D T D H N G A V S F E D F I K G L S I L L R G T V Q E K L N W A F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
S
S S S T T
S S
S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N L Y D I N K D G Y I T K E E M L D I M K A I Y D M M G P R Q H V E T F F Q K M D K N K D G V V T I D E F I E S C Q K D E N I M R S M Q L F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
B
T
S S
S S B
T

. . . .

Sequence E N V I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	N	L	E	G	L	E	M	I	A	V	L	I	V	I	V	L	F	V	K	L	L	E	Q	F	G	L	I	E	D	S	V	E	D	E	L	E	M	A	T	V	R	H	R	P	E	A	L	E	L	L	E	A	Q	S	K	F	T	K	K	E	L	Q	I	L	Y	R	G	F	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																										T											T	T	S		S	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	E	C	P	S	G	V	V	N	E	E	T	F	K	E	I	Y	S	Q	F	F	P	Q	G	D	S	T	T	Y	A	H	F	L	F	N	A	F	D	T	D	H	N	G	A	V	S	F	E	D	F	I	K	G	L	S	I	L	L	R	G	T	V	Q	E	K	L	N	W	A	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T			S																S		S	S	S											T	T		S	S			S	S																S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	L	Y	D	I	N	K	D	G	Y	I	T	K	E	E	M	L	D	I	M	K	A	I	Y	D	M	M	G	P	R	Q	H	V	E	T	F	F	Q	K	M	D	K	N	K	D	G	V	V	T	I	D	E	F	I	E	S	C	Q	K	D	E	N	I	M	R	S	M	Q	L	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T		S	S			B																			T											S	S		S	S	B												T
	.	.	.	.
Sequence	E	N	V	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T