PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3cqcA_

Fold library id	PDB Header	Molecule	Title
c3cqcA_	PDB header: protein transport	Chain: A: PDB Molecule: nuclear pore complex protein nup107;	PDBTitle: nucleoporin nup107/nup133 interaction complex

Links to external resources
Added to library: Tue Mar 16 13:47:08 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E D R L K I D V I D W L V F D P A Q R A E A L K Q G N A I M R K F L A S K K H E A A K E V F V K I P Q D S I A E I Y L P A E D D N A I R E H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S G G G T T
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L C I R A Y L E A H E T F N E W F K H M N S V P Q K P A L I P Q P T F T E K V A H E H K E K K Y E M D F G I W K G H L D A L T A D V K E K M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y N V L L F V D G G W M V D V R E D A K E D H E R T H Q M V L L R K L C L P M L C F L L H T I L H S T G Q Y Q E C L Q L A D M V S S E R H K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T T
T T
S
S
T T
T
T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . .

Sequence L Y L V F S K E E L R K L L Q K L R E S S L M L L D Q G L D P L G Y E I Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G S
T T T B
T T S
B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	D	R	L	K	I	D	V	I	D	W	L	V	F	D	P	A	Q	R	A	E	A	L	K	Q	G	N	A	I	M	R	K	F	L	A	S	K	K	H	E	A	A	K	E	V	F	V	K	I	P	Q	D	S	I	A	E	I	Y	L	P	A	E	D	D	N	A	I	R	E	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S	G	G	G																		T	T												S		T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	C	I	R	A	Y	L	E	A	H	E	T	F	N	E	W	F	K	H	M	N	S	V	P	Q	K	P	A	L	I	P	Q	P	T	F	T	E	K	V	A	H	E	H	K	E	K	K	Y	E	M	D	F	G	I	W	K	G	H	L	D	A	L	T	A	D	V	K	E	K	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					T	T									S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	N	V	L	L	F	V	D	G	G	W	M	V	D	V	R	E	D	A	K	E	D	H	E	R	T	H	Q	M	V	L	L	R	K	L	C	L	P	M	L	C	F	L	L	H	T	I	L	H	S	T	G	Q	Y	Q	E	C	L	Q	L	A	D	M	V	S	S	E	R	H	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T		T	T	T		T	T			S				S																																T	T							T								T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Sequence	L	Y	L	V	F	S	K	E	E	L	R	K	L	L	Q	K	L	R	E	S	S	L	M	L	L	D	Q	G	L	D	P	L	G	Y	E	I	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	G	S																					T	T	T	B		T	T	S		B