Fold library entry viewer: c3cnfB_

Added to library: Tue Mar 16 12:44:09 2010
Links to external resources

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	F	T	K	K	D	K	L	R	A	S	E	A	D	D	R	I	V	G	P	T	V	N	L	F	K	Y	G	A	A	V	V	N	I	D	L	N	R	D	F	F	D	T	A	T	G	I	D	L	T	K	G	I	P	L	V	Q	D	L	L	V	P	I	G	V	T	A	G	A	E	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	G	G	G	S																			S		S	S	G	G	G	S	S			T	T	S				S			S	S	S	S					S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	A	E	Y	V	S	G	L	L	M	V	L	D	N	R	L	V	I	V	G	E	T	T	T	P	M	S	N	T	L	S	T	V	V	N	N	V	L	R	T	T	Y	H	N	N	V	G	V	N	P	A	L	L	R	D	F	T	Q	V	N	W	L	N	R	D	I	T	N	M	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	T	S													T	T			S	S	G	G	G		B			S		S																S	S	S	S	T	T											S		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Q	Q	A	G	T	K	Y	G	L	G	L	T	E	T	R	L	D	Y	V	R	L	V	K	T	I	V	G	H	A	L	N	I	D	H	F	A	A	S	V	L	N	I	N	L	R	A	L	M	E	A	N	V	T	A	D	D	R	I	K	A	L	Q	A	H	S	M	I	S	T	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B	S			S	S	S	S	S			S	S										S	S					S	S		S			S	S	T	T																	T	T	T	S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	F	H	G	P	N	Q	G	A	L	R	P	E	L	A	F	D	H	D	H	I	I	R	C	L	M	L	A	A	A	N	Y	P	R	L	E	G	I	I	V	Q	I	N	T	G	Y	V	A	S	A	N	V	I	R	P	V	S	E	K	R	Y	F	P	E	N	L	E	Q	N	Q	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S		S	S	T	T	T	S	S	S	S	S											T	T					T							S		S	T	T															S	T	T	S								S		S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	A	A	R	L	V	S	A	V	K	A	R	A	S	E	A	D	I	S	S	I	H	L	A	I	A	R	E	V	S	P	M	F	N	V	H	E	L	K	K	I	A	E	S	F	E	D	P	S	S	I	V	V	V	L	E	F	I	L	F	A	L	F	F	P	T	E	F	N	R	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	T	T	S		S			T	T												T	S		S	S		S		T	T						T	T					S	S													S	S	G	G	G	G
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	K	G	D	I	Q	N	V	L	L	L	F	F	S	R	W	Y	P	V	E	Y	G	I	F	V	Q	R	G	A	T	Y	T	I	N	A	A	G	E	F	E	F	S	G	R	N	E	K	W	D	Q	A	L	Y	L	S	E	H	F	P	A	L	F	S	D	V	P	L	A	G	A	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G			T	T	T	T														T						T	T					T	T	S	S		S	S	S	T	T	T					S												T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	T	I	I	A	I	M	R	L	F	T	P	Q	G	F	L	R	T	D	D	L	A	I	A	A	N	F	P	R	A	S	R	N	P	Q	T	Y	I	P	Y	T	N	Q	R	G	T	V	T	N	E	F	A	S	R	F	R	T	I	V	A	T	L	A	N	V	V	N	E	R	A	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S						S	T	T							S	S	S	S		S	S	S	S			S	S	S	S		T	T																						T	T	S	S	S		S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	Q	D	D	M	Q	K	A	T	R	S	C	T	K	Q	W	L	R	H	L	E	T	Q	F	D	N	I	A	V	A	H	T	D	H	L	S	V	V	Y	A	T	M	S	N	F	M	L	N	F	T	N	N	F	A	T	H	V	A	V	V	L	Y	Q	S	G	V	I	N	G	P	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T	G	G	G													T	S	S				S				S	S			S		S	S		S	S			S	T	T		S	S		S			T	T	T
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	S	T	Y	L	R	E	N	E	V	L	V	V	M	P	D	Y	Y	D	V	V	S	R	F	A	N	A	N	L	Q	M	N	N	N	R	Y	H	E	S	V	L	E	I	A	D	I	F	D	Q	A	D	F	I	Q	T	S	D	A	V	R	Q	L	R	A	L	M	P	T	L	S	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	G	G	G	S	S			S		S	S									T	T														T	T	T	T	T																	T	T	S			S		S	S	S
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	S	Q	I	R	H	A	I	E	R	I	A	Q	I	T	D	V	D	S	T	D	Y	G	K	L	T	L	R	F	L	G	T	L	T	R	S	L	K	M	Q	N	A	Q	I	R	R	I	R	P	D	G	T	V	L	R	Y	D	D	Q	I	D	I	E	A	F	R	W	S	R	Y	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	T	T								T	T	T	T			T	T	T										T	T	T	T							S	S					S	S	S										S	S	S				S				S	S	S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	L	D	E	L	Q	L	R	R	L	S	V	G	L	R	L	I	T	N	P	R	I	A	R	R	F	N	G	V	R	I	M	Y	L	T	D	D	D	P	D	P	D	F	V	P	D	V	P	E	G	Y	V	A	V	Q	Y	A	H	R	L	F	S	S	S	L	A	N	K	R	N	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	S		T	T	S	S	S														S	S																						S	S															S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	V	T	Y	T	H	P	P	T	G	M	A	Y	P	S	P	T	G	R	P	H	V	H	M	T	I	N	E	R	A	G	M	S	K	L	V	A	D	N	I	I	A	S	V	I	K	S	N	W	V	V	D	I	L	D	I	E	Y	T	A	E	V	M	T	P	S	E	G	Y	T	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S	S	S							S	S	S								T	T	T					T	T	S														S	S												S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	H	V	D	A	E	S	I	M	T	A	P	K	G	K	L	F	H	L	Q	F	M	D	G	L	L	R	P	E	A	S	G	E	D	M	R	L	I	Y	P	L	Q	P	I	S	V	A	R	S	M	R	A	I	V	N	H	N	E	V	D	R	P	R	E	M	D	T	G	T	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S	S								T	T	S	S	S			S	S					S	S				S									S	S	S	S	S	S								S	S									S		S	S
	.	.	.	.	.	.	.	.	.	920	.	.	.	.
Sequence	R	N	G	D	L	L	Y	S	P	V	A	N	G	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S							S	S			S

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PDB structure

FASTA sequence

Hidden Markov model

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