PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3bk5A_

Fold library id	PDB Header	Molecule	Title
c3bk5A_	PDB header: structural genomics, unknown function	Chain: A: PDB Molecule: putative outer membrane lipoprotein-sorting	PDBTitle: crystal structure of putative outer membrane lipoprotein-2 sorting protein domain from vibrio parahaemolyticus

Links to external resources
Added to library: Tue Mar 16 12:00:08 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N A E K G L E I A Q E R K A R D E G W G D S I A T X E X I L K N A Q E S S T R L X R L K S L E V E G D G D K G L T I F D Q P R D V T G T A F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S
S T T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L N H S H T I G A D D Q W L Y L P A L K R V K R I S S R N K S G P F X G S E F A Y E D L S S F E I E K Y R F N H L K D E K F N G Q D V F V L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T T T
G G G T T S B S T T S S
B G G G G S
G G G T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E Q I P T D K N S G Y T K Q V V W L D K A H Y R P L K V E F Y D R K G A L L K T L T F A N Y K Q Y L D K Y W R A H T X A X T N H Q T G K S T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T S S T T T
T T S
T T T T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . .

Sequence E L N T S D L R F Q T G L E E N D F N K N V L K R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G
G G G T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	A	E	K	G	L	E	I	A	Q	E	R	K	A	R	D	E	G	W	G	D	S	I	A	T	X	E	X	I	L	K	N	A	Q	E	S	S	T	R	L	X	R	L	K	S	L	E	V	E	G	D	G	D	K	G	L	T	I	F	D	Q	P	R	D	V	T	G	T	A	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T																																	T	T	S											S	T	T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	N	H	S	H	T	I	G	A	D	D	Q	W	L	Y	L	P	A	L	K	R	V	K	R	I	S	S	R	N	K	S	G	P	F	X	G	S	E	F	A	Y	E	D	L	S	S	F	E	I	E	K	Y	R	F	N	H	L	K	D	E	K	F	N	G	Q	D	V	F	V	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S	S									T	T	T	T							G	G	G	T	T	S	B	S	T	T	S	S		B	G	G	G	G	S				G	G	G												T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	Q	I	P	T	D	K	N	S	G	Y	T	K	Q	V	V	W	L	D	K	A	H	Y	R	P	L	K	V	E	F	Y	D	R	K	G	A	L	L	K	T	L	T	F	A	N	Y	K	Q	Y	L	D	K	Y	W	R	A	H	T	X	A	X	T	N	H	Q	T	G	K	S	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S		T	T	S	S										T	T	T											T	T	S															T	T	T												T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Sequence	E	L	N	T	S	D	L	R	F	Q	T	G	L	E	E	N	D	F	N	K	N	V	L	K	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															G	G	G	G		G	G	G	T	T