PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3b89A_

Fold library id	PDB Header	Molecule	Title
c3b89A_	PDB header: transferase	Chain: A: PDB Molecule: 16s rrna methylase;	PDBTitle: crystal structure of rrna methylase from escherichia coli

Links to external resources
Added to library: Tue Mar 16 14:25:40 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N I N D A L T S I L A S K K Y R A L C P D T V R R I L T E E W G R H K S P K Q T V E A A R T R L H G I C G A V T P E S L K A A A A A L S A G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S T T T T T B
T T
S S T T T T S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D V K K A L S L H A S T K E R L A E L D T L Y D F I F S A E T P R R V L D I A C G L N P L A L Y E R G I A S V W G C D I H Q G L G D V I T P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S S S T T S S
S T
T T T T T T
S S B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence F A R E K D W D F T F A L Q D V L C A P P A E A G D L A L I F K L L P L L E R E Q A G S A X A L L Q S L N T P R X A V S F P T R S E A N Y A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
T T T S
B
S
S
S T T T
B
S S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240

Sequence A W F E G G L P A E F E I E D K K T I G T E L I Y L I K K N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	I	N	D	A	L	T	S	I	L	A	S	K	K	Y	R	A	L	C	P	D	T	V	R	R	I	L	T	E	E	W	G	R	H	K	S	P	K	Q	T	V	E	A	A	R	T	R	L	H	G	I	C	G	A	V	T	P	E	S	L	K	A	A	A	A	A	L	S	A	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	S	T	T	T	T	T	B															T	T			S	S	T	T										T	T	S																	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	V	K	K	A	L	S	L	H	A	S	T	K	E	R	L	A	E	L	D	T	L	Y	D	F	I	F	S	A	E	T	P	R	R	V	L	D	I	A	C	G	L	N	P	L	A	L	Y	E	R	G	I	A	S	V	W	G	C	D	I	H	Q	G	L	G	D	V	I	T	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	S						S	S	T	T										S	S				S						T		T	T	T						T	T	T		S							S	B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	F	A	R	E	K	D	W	D	F	T	F	A	L	Q	D	V	L	C	A	P	P	A	E	A	G	D	L	A	L	I	F	K	L	L	P	L	L	E	R	E	Q	A	G	S	A	X	A	L	L	Q	S	L	N	T	P	R	X	A	V	S	F	P	T	R	S	E	A	N	Y	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T										T	T	T	S					B		S						S									S	T	T								T		B		S								S					S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence	A	W	F	E	G	G	L	P	A	E	F	E	I	E	D	K	K	T	I	G	T	E	L	I	Y	L	I	K	K	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T										T	T