PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3b4rA_

Fold library id	PDB Header	Molecule	Title
c3b4rA_	PDB header: hydrolase	Chain: A: PDB Molecule: putative zinc metalloprotease mj0392;	PDBTitle: site-2 protease from methanocaldococcus jannaschii

Links to external resources
Added to library: Wed Jan 9 17:26:02 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Y S I R L F K I M G I P I E L H I T F I L F L V V I I G L S I M N N S I F W A V L F I L L F V S V V L H E L G H S Y V A K K Y G V K I E K I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L L L P I G G V A M M D K I P K E G E L R I G I A G P L V S F I I G I V L L I V S Q F F D I N I N G Y P L L Y T L S L L N L M L G G F N L I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
B
S S S T T T
T T T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P A F P M D G G R I L R A I L S K K Y G Y L K S T K I A A N I G K S L A L I M L L F G L L S M N I I L I L V S L F V Y F G A E Q E S R V V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S S
T T

. . . . . . . .

Sequence V E T I F K N I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Y	S	I	R	L	F	K	I	M	G	I	P	I	E	L	H	I	T	F	I	L	F	L	V	V	I	I	G	L	S	I	M	N	N	S	I	F	W	A	V	L	F	I	L	L	F	V	S	V	V	L	H	E	L	G	H	S	Y	V	A	K	K	Y	G	V	K	I	E	K	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T																				T	T	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	L	L	P	I	G	G	V	A	M	M	D	K	I	P	K	E	G	E	L	R	I	G	I	A	G	P	L	V	S	F	I	I	G	I	V	L	L	I	V	S	Q	F	F	D	I	N	I	N	G	Y	P	L	L	Y	T	L	S	L	L	N	L	M	L	G	G	F	N	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S	S		B								S	S	S																							T	T	T						T	T																		T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	A	F	P	M	D	G	G	R	I	L	R	A	I	L	S	K	K	Y	G	Y	L	K	S	T	K	I	A	A	N	I	G	K	S	L	A	L	I	M	L	L	F	G	L	L	S	M	N	I	I	L	I	L	V	S	L	F	V	Y	F	G	A	E	Q	E	S	R	V	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S	S	S																																									T	T
	.	.	.	.	.	.	.	.
Sequence	V	E	T	I	F	K	N	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T