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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3avsA_

Fold library idPDB HeaderMoleculeTitle
c3avsA_PDB header: oxidoreductaseChain: A: PDB Molecule: lysine-specific demethylase 6a;PDBTitle: catalytic fragment of utx/kdm6a bound with n-oxyalylglycine, and2 ni(ii)


Added to library: Wed Jan 9 20:12:20 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SVSIYPSSAEVLKACRNNSSILLDKCPPPRPPSSPYPPLPKDKLNPPTPSIYLENKRDAFFPPLHQFCTN
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Known secondary structure (DSSP)



S

T



SS










S
SS


GGGSS





ST
T
 .........80.........90.........100.........110.........120.........130.........140
Sequence PNNPVTVIRGLAGALKLDLGLFSTKTLVEANNEHMVEVRTQLLQPADENWDPTGTKKIWHCESNRSHTTI
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Known secondary structure (DSSP) TT
STT

GGGGSTT



TT

B
TTSSSB
SB


 .........150.........160.........170.........180.........190.........200.........210
Sequence AKYAQYQASSFQESLRPFKTIKFGTNIDLSDDKKWKLQLHELTKLPAFVRVVSAGNLLSHVGHTILGMNT
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Known secondary structure (DSSP) T






TTTSGGGS
GGG
SS
TTBGGGGSSS

TTTTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence VQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFVVPEGYWGVLNDFCEKNNLNFLMGSWWPNLEDLY
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Known secondary structure (DSSP)

TT


GGG
S

GGGTT

TTTS
B


 .........290.........300.........310.........320.........330.........340.........350
Sequence EANVPVYRFIQRPGDLVWINAGTVHWVQAIGWCNNIAWNVGPLTACQYKLAVERYEWNKLQSVKSIVPMV
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Known secondary structure (DSSP) TT



TT

TT
SSS
BSSTT


SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence HLSWNMARNIKVSDPKLFEMIKYCLLRTLKQCQTLREALIAAGKEIIWHGRTKEEPAHYCSICEVEVFDL
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Known secondary structure (DSSP)




TT






TT



TTT


S
 .........430.........440.........450.........460.........470....
Sequence LFVTNESNSRKTYIVHCQDCARKTSGNLENFVVLEQYKMEDLMQVYDQFTLAPP
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Known secondary structure (DSSP) TT



B

TT
TT
S







Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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