PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3am6C_

Fold library id	PDB Header	Molecule	Title
c3am6C_	PDB header: transport protein	Chain: C: PDB Molecule: rhodopsin-2;	PDBTitle: crystal structure of the proton pumping rhodopsin ar2 from marine alga2 acetabularia acetabulum

Links to external resources
Added to library: Sat Jul 9 09:32:46 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M A D V E T E T G M I A Q W I V F A I M A A A A I A F G V A V H F R P L K S A Y Y I N I A I C T I A A T A Y Y A M A V N Y Q D L T M N G E R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
G G G
T T T S
B S S S B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q V V Y A R Y I D W V L T T P L L L L D L I V M T K M G G V M I S W V I G A D I F M I V F G I L G A F E D E H K F K W V Y F I A G C V M Q A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
T T T S
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V L T Y G M Y N A T W K D D K S P E Y H S S Y V S L L V F L S I L W V F Y P V V W A F G S G S G V L S V D N E A I L M G I L D V L A K P L F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T T T S S S
T

. . . . . . . . . 220 . . . .

Sequence G M G C L I A H E T I F K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	A	D	V	E	T	E	T	G	M	I	A	Q	W	I	V	F	A	I	M	A	A	A	A	I	A	F	G	V	A	V	H	F	R	P	L	K	S	A	Y	Y	I	N	I	A	I	C	T	I	A	A	T	A	Y	Y	A	M	A	V	N	Y	Q	D	L	T	M	N	G	E	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B																												G	G	G																											T	T	T	S			B	S	S	S	B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	V	V	Y	A	R	Y	I	D	W	V	L	T	T	P	L	L	L	L	D	L	I	V	M	T	K	M	G	G	V	M	I	S	W	V	I	G	A	D	I	F	M	I	V	F	G	I	L	G	A	F	E	D	E	H	K	F	K	W	V	Y	F	I	A	G	C	V	M	Q	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B			T																			T	T	S																										T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	L	T	Y	G	M	Y	N	A	T	W	K	D	D	K	S	P	E	Y	H	S	S	Y	V	S	L	L	V	F	L	S	I	L	W	V	F	Y	P	V	V	W	A	F	G	S	G	S	G	V	L	S	V	D	N	E	A	I	L	M	G	I	L	D	V	L	A	K	P	L	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S																							T									T	T	T	T	S	S	S																	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Sequence	G	M	G	C	L	I	A	H	E	T	I	F	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T